RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 SDHAF3Q9NRP4 125 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 PNO1Q9NRX1 252 aaKnown RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 CYSLTR2Q9NS75 346 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 MAN2C1Q9NTJ4 1040 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ECHDC1Q9NTX5 307 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZDHHC18Q9NUE0 388 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 MED17Q9NVC6 651 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 OSER1Q9NX31 292 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ASIC5Q9NY37 505 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 SPHK1Q9NYA1 384 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 RDH8Q9NYR8 311 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 NKIRAS1Q9NYS0 192 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 NLGN3Q9NZ94 848 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 SMARCAL1Q9NZC9 954 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 NPAP1Q9NZP6 1156 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 EMC3Q9P0I2 261 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 PDP1Q9P0J1 537 aaPredicted RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZKSCAN7Q9P0L1 754 aaPredicted RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 IFNKQ9P0W0 207 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 PIPOXQ9P0Z9 390 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 GCNT4Q9P109 453 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 MDFICQ9P1T7 246 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 KLHL9Q9P2J3 617 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 B3GAT1Q9P2W7 334 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ONECUT1Q9UBC0 465 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 P2RX2Q9UBL9 471 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 LHX3Q9UBR4 397 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 SLC9A2Q9UBY0 812 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 PLEKHB1Q9UF11 243 aaPredicted RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 LRWD1Q9UFC0 647 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 NARFQ9UHQ1 456 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 LCMT1Q9UIC8 334 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ZNF639Q9UID6 485 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ATPIF1Q9UII2 106 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 NOCTQ9UK39 431 aaKnown RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 FBXL2Q9UKC9 423 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ADAM21Q9UKJ8 722 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ADAM28Q9UKQ2 775 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 IKZF2Q9UKS7 526 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 FBXO4Q9UKT5 387 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 CDH9Q9ULB4 789 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 NPIPA1Q9UND3 350 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ABCG2Q9UNQ0 655 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 FLVCR2Q9UPI3 526 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 B9D1Q9UPM9 204 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 GAB2Q9UQC2 676 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 TNNQ9UQP3 1299 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 LAMP3Q9UQV4 416 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 EIF3LQ9Y262 564 aaKnown RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 NCKAP1Q9Y2A7 1128 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 B3GALT5Q9Y2C3 310 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 GSTK1Q9Y2Q3 226 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 IFT52Q9Y366 437 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 TMED7Q9Y3B3 224 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 RAP2CQ9Y3L5 183 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 CBY1Q9Y3M2 126 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 LOXL2Q9Y4K0 774 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 PPIAL4AQ9Y536 164 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 LRP12Q9Y561 859 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 RIPK3Q9Y572 518 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ATP6V1DQ9Y5K8 247 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 MAD1L1Q9Y6D9 718 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 SMAD5-AS1Q9Y6J3 95 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 PRSS21Q9Y6M0 314 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 KIAA1217Q5T5P2 1943 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 UMODL1Q5DID0 1318 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 PHLPP2Q6ZVD8 1323 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 POLR3AO14802 1390 aaPredicted RBP0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 INSRP06213 1382 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 USP47Q96K76 1375 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 CCDC7Q96M83 1385 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 MAP3K5Q99683 1374 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 NINLQ9Y2I6 1382 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 ATP10DQ9P241 1426 aa0.53□□□□□ -2.32
RNU4-54P-201ENST00000516428 POLR2AP24928 1970 aaKnown RBP0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 IGLV5-37A0A075B6J1 123 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 TRAV6A0A075B6T7 132 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 KCNE1BA0A087WTH5 132 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 SAA2-SAA4A0A096LPE2 208 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 A0A0A6YYH2 397 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 GOLGA8QA0A0J9YX86 632 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 C1orf232A0A0U1RR37 186 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 IQANK1A0A1B0GTG1 560 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 A0A1B0GTI1 187 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMEM272A0A1B0GTI8 110 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 KBTBD11-OT1A0A1B0GTJ5 212 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 A0A1B0GVL5 298 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 A0A1W2PP11 408 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 A0A1W2PPE3 182 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 A0A1W2PRD5 423 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 A0A1W2PS18 150 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMEM120BA0PK00 339 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC22A23A1A5C7 686 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 SH3PXD2BA1X283 911 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 HYKKA2RU49 373 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 MEIOCA2RUB1 952 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 RAB19A4D1S5 217 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF840PA6NDX5 716 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 SMCO2A6NFE2 343 aa0.52□□□□□ -2.33
RNU4-54P-201ENST00000516428 MGAT4DA6NG13 374 aa0.52□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms