RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 GIMAP5Q96F15 307 aa13.93□□□□□ -0.18
NUP54-217ENST00000514987 OR2A14Q96R47 310 aa13.93□□□□□ -0.18
NUP54-217ENST00000514987 OR2A5Q96R48 311 aa13.93□□□□□ -0.18
NUP54-217ENST00000514987 CENPOQ9BU64 300 aa13.93□□□□□ -0.18
NUP54-217ENST00000514987 LYRM4Q9HD34 91 aa13.93□□□□□ -0.18
NUP54-217ENST00000514987 ISYNA1Q9NPH2 558 aa13.93□□□□□ -0.18
NUP54-217ENST00000514987 KRCC1Q9NPI7 259 aaPredicted RBP13.93□□□□□ -0.18
NUP54-217ENST00000514987 TRPV5Q9NQA5 729 aa13.93□□□□□ -0.18
NUP54-217ENST00000514987 CHCHD3Q9NX63 227 aaKnown RBP13.93□□□□□ -0.18
NUP54-217ENST00000514987 KCMF1Q9P0J7 381 aa13.93□□□□□ -0.18
NUP54-217ENST00000514987 KLHL3Q9UH77 587 aa13.93□□□□□ -0.18
NUP54-217ENST00000514987 SPACA6W5XKT8 324 aa13.93□□□□□ -0.18
NUP54-217ENST00000514987 MDC1Q14676 2089 aaKnown RBP13.93□□□□□ -0.18
NUP54-217ENST00000514987 A0A087WUU8 490 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 FAM170BA6NMN3 283 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 PRKYO43930 277 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 SNX4O95219 450 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 OR5F1O95221 314 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 EML2O95834 649 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 IGFBP1P08833 259 aaPredicted RBP13.92□□□□□ -0.18
NUP54-217ENST00000514987 MYL12AP19105 171 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 AK4P27144 223 aaPredicted RBP13.92□□□□□ -0.18
NUP54-217ENST00000514987 SRP54P61011 504 aaKnown RBP13.92□□□□□ -0.18
NUP54-217ENST00000514987 RAB40BQ12829 278 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 CDC20Q12834 499 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 HTR4Q13639 388 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 LARS2Q15031 903 aaKnown RBP13.92□□□□□ -0.18
NUP54-217ENST00000514987 SSX1Q16384 188 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 SNAPC1Q16533 368 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 ARHGAP11BQ3KRB8 267 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 EIPR1Q53HC9 387 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 SYT14P1Q58G82 188 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 C3orf38Q5JPI3 329 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 EOGTQ5NDL2 527 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 ZNF730Q6ZMV8 503 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 TRIM48Q8IWZ4 208 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 OR2L13Q8N349 312 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 KCT2Q8NC54 265 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 GALNT6Q8NCL4 622 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 FLVCR1-AS1Q8TAF5 88 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 TMEM163Q8TC26 289 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 ACOT11Q8WXI4 607 aaPredicted RBP13.92□□□□□ -0.18
NUP54-217ENST00000514987 DIO2Q92813 273 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 PMM1Q92871 262 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 OSTF1Q92882 214 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 MRGPRX1Q96LB2 322 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 BMFQ96LC9 184 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 ZNF582Q96NG8 517 aaPredicted RBP13.92□□□□□ -0.18
NUP54-217ENST00000514987 C8orf33Q9H7E9 229 aaPredicted RBP13.92□□□□□ -0.18
NUP54-217ENST00000514987 EVA1AQ9H8M9 152 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 CPNE5Q9HCH3 593 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 HHATLQ9HCP6 504 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 FGF20Q9NP95 211 aaPredicted RBP13.92□□□□□ -0.18
NUP54-217ENST00000514987 EQTNQ9NQ60 294 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 TAS2R16Q9NYV7 291 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 STUB1Q9UNE7 303 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 HS3ST3A1Q9Y663 406 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 KCNE3Q9Y6H6 103 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 KRBA1A5PL33 1030 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 LOC110117498-PIK3R3F6TDL0 507 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 TPST2O60704 377 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 CSO75390 466 aaKnown RBP13.92□□□□□ -0.18
NUP54-217ENST00000514987 RASGRP1O95267 797 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 THBS1P07996 1170 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 UGT2B7P16662 529 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 DGKEP52429 567 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 RGS8P57771 180 aaPredicted RBP13.92□□□□□ -0.18
NUP54-217ENST00000514987 IFITM3Q01628 133 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 SPANXN2Q5MJ10 180 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 ZCCHC12Q6PEW1 402 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 FIGLAQ6QHK4 219 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 RD3Q7Z3Z2 195 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 FLCNQ8NFG4 579 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 JPH3Q8WXH2 748 aaPredicted RBP13.92□□□□□ -0.18
NUP54-217ENST00000514987 PIK3R3Q92569 461 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 KAT2AQ92830 837 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 FGF11Q92914 225 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 RFKQ969G6 155 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 TSACCQ96A04 125 aaPredicted RBP13.92□□□□□ -0.18
NUP54-217ENST00000514987 RERGQ96A58 199 aaPredicted RBP13.92□□□□□ -0.18
NUP54-217ENST00000514987 SLC35A4Q96G79 324 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 LRR1Q96L50 414 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 NUAK2Q9H093 628 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 ARMC7Q9H6L4 198 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 MED17Q9NVC6 651 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 NDUFB11Q9NX14 153 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 ACTR10Q9NZ32 417 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 CLEC1BQ9P126 229 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 TESQ9UGI8 421 aaKnown RBP13.92□□□□□ -0.18
NUP54-217ENST00000514987 DAPP1Q9UN19 280 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 SSR3Q9UNL2 185 aa13.92□□□□□ -0.18
NUP54-217ENST00000514987 SCAMP1O15126 338 aa13.91□□□□□ -0.18
NUP54-217ENST00000514987 ZSCAN9O15535 394 aaPredicted RBP13.91□□□□□ -0.18
NUP54-217ENST00000514987 PRODHO43272 600 aa13.91□□□□□ -0.18
NUP54-217ENST00000514987 UBXN7O94888 489 aa13.91□□□□□ -0.18
NUP54-217ENST00000514987 SOX30O94993 753 aa13.91□□□□□ -0.18
NUP54-217ENST00000514987 ADRA2AP08913 450 aa13.91□□□□□ -0.18
NUP54-217ENST00000514987 ACP2P11117 423 aa13.91□□□□□ -0.18
NUP54-217ENST00000514987 FPR3P25089 353 aa13.91□□□□□ -0.18
NUP54-217ENST00000514987 ILF3Q12906 894 aaKnown RBP eCLIP13.91□□□□□ -0.185e-6■■□□□ 11.7
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms