RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 RTL3Q8N8U3 475 aaKnown RBP11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 SIDT2Q8NBJ9 832 aaKnown RBP11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 CHTF18Q8WVB6 975 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 EEF1AKMT1Q8WVE0 214 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 CPNE2Q96FN4 548 aaPredicted RBP11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 TSGA13Q96PP4 275 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 TEX12Q9BXU0 123 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 TLNRD1Q9H1K6 362 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 TMEM231Q9H6L2 316 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 ACSS1Q9NUB1 689 aaPredicted RBP11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 C2orf42Q9NWW7 574 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 PISDQ9UG56 409 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 NEU3Q9UQ49 428 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 ARL5AQ9Y689 179 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 SUOXP51687 545 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 RPP30P78346 268 aaKnown RBP11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 FOXK2Q01167 660 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 MAD2L1Q13257 205 aaPredicted RBP11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 PEA15Q15121 130 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 TMEM255AQ5JRV8 349 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 NCMAPQ5T1S8 102 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 TGIF2LXQ8IUE1 241 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 OR5M3Q8NGP4 307 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 SLAMF9Q96A28 289 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 POM121Q96HA1 1249 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 LRR1Q96L50 414 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 TKTL2Q9H0I9 626 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 TDRD3Q9H7E2 651 aaKnown RBP11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 BRD9Q9H8M2 597 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 CYSLTR2Q9NS75 346 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 TMEM161AQ9NX61 479 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 SF3B6Q9Y3B4 125 aaKnown RBP11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 MYO10Q9HD67 2058 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 OR7A17O14581 309 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 UCHL1P09936 223 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 ADCYAP1P18509 176 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 CNR1P21554 472 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 LMO2P25791 158 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 RAP2BP61225 183 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 MEF2AQ02078 507 aaPredicted RBP11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 KRT33BQ14525 404 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 HEPACAMQ14CZ8 416 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 CEACAM20Q6UY09 585 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 ARRDC1Q8N5I2 433 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 ZNF383Q8NA42 475 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 EDEM1Q92611 657 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 ARMC5Q96C12 935 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 LINGO1Q96FE5 620 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 MFFQ9GZY8 342 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 FN3KQ9H479 309 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 NT5MQ9NPB1 228 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 FTSJ1Q9UET6 329 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 HACL1Q9UJ83 578 aa11.38□□□□□ -0.59
LIMCH1-213ENST00000511496 STK25O00506 426 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 GABRPO00591 440 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 GALR3O60755 368 aaPredicted RBP11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 RAB36O95755 333 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 ZNF44P15621 663 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 UGT2B7P16662 529 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 CRYBA2P53672 197 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 EPHA4P54764 986 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 PRR5LQ6MZQ0 368 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 CDPF1Q6NVV7 123 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 FAM196AQ6ZSG2 479 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 ESPNLQ6ZVH7 1005 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 IKBIPQ70UQ0 350 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 PGAP1Q75T13 922 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 LRRC28Q86X40 367 aaPredicted RBP11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 CLECL1Q8IZS7 167 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 ACOT11Q8WXI4 607 aaPredicted RBP11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 OR1F2PQ96R84 312 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 PIGQQ9BRB3 760 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 SLC25A32Q9H2D1 315 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 WDCPQ9H6R7 721 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 ASF1BQ9NVP2 202 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 CLDN5O00501 218 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 NARSO43776 548 aaKnown RBP11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 SRPRAP08240 638 aaKnown RBP11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 HSD3B1P14060 373 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 MBTD1Q05BQ5 628 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 PTPRNQ16849 979 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 CYB5RLQ6IPT4 315 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 GNPDA2Q8TDQ7 276 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 CHFRQ96EP1 664 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 RHBGQ9H310 441 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 NMNAT1Q9HAN9 279 aaPredicted RBP11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 TREM1Q9NP99 234 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 PTGFRNQ9P2B2 879 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 FEM1BQ9UK73 627 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 PPT2Q9UMR5 302 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 RASD1Q9Y272 281 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 COL2A1P02458 1487 aaPredicted RBP11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 COL11A2P13942 1736 aaPredicted RBP11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 HEPACAM2A8MVW5 462 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 ZNF705EA8MWA4 302 aaPredicted RBP11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 MAGEB17A8MXT2 336 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 SEPT4O43236 478 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 NIPSNAP2O75323 286 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 SOX30O94993 753 aa11.37□□□□□ -0.59
LIMCH1-213ENST00000511496 FARS2O95363 451 aaKnown RBP11.37□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 145.5 ms