RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 SLC28A1O00337 649 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 HRGP04196 525 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 COX7A2P14406 83 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 CNR2P34972 360 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 HSD17B2P37059 387 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 HTR3AP46098 478 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 SELPLGQ14242 412 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 ERV3-1Q14264 604 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 INTS11Q5TA45 600 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 GRHL2Q6ISB3 625 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 LCTLQ6UWM7 567 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 RASSF6Q6ZTQ3 369 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 FUNDC1Q8IVP5 155 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 C19orf18Q8NEA5 215 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 OR6F1Q8NGZ6 308 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 KCNC2Q96PR1 638 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 NTMT1Q9BV86 223 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 AMBRA1Q9C0C7 1298 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 PCBD2Q9H0N5 130 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 HDHD2Q9H0R4 259 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 PDP1Q9P0J1 537 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 HCN3Q9P1Z3 774 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 TMEM181Q9P2C4 612 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 NLKQ9UBE8 527 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 TRPS1Q9UHF7 1281 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 ATPIF1Q9UII2 106 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 ZNF106Q9H2Y7 1883 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 IGKV1-8A0A0C4DH67 115 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 B8ZZF3 427 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 TMEM150CB9EJG8 249 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 H0YGG7 62 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 LDOC1O95751 146 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 MYL9P24844 172 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 CERS1P27544 350 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 PRKAG1P54619 331 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 TAS2R50P59544 299 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 ARF3P61204 181 aaPredicted RBP8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 UBE2IP63279 158 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 CHRNEQ04844 493 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 TRAP1Q12931 704 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 UGT3A2Q3SY77 523 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 FAM174BQ3ZCQ3 159 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 LIPJQ5W064 366 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 PRSS41Q7RTY9 318 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 GPR135Q8IZ08 494 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 SHISA5Q8N114 240 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 AMER3Q8N944 861 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 OR2T12Q8NG77 320 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 OR4K1Q8NGD4 311 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 SAP25Q8TEE9 199 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 PPP3R2Q96LZ3 170 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 CHIAQ9BZP6 476 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 MRPL39Q9NYK5 338 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 CCDC59Q9P031 241 aaKnown RBP8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 COMMD3Q9UBI1 195 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 RNF6Q9Y252 685 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 PCDHB14Q9Y5E9 798 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 FREM2Q5SZK8 3169 aa8.17□□□□□ -1.1
LIMCH1-209ENST00000509277 ACACAQ13085 2346 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 A0A0A6YYC8 382 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 A0A1W2PQ09 198 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 I3L1I5 382 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 POLR1CO15160 346 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 ACOX3O15254 700 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 NME6O75414 186 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 ZNF888P0CJ79 500 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 LIPAP38571 399 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 RFX3P48380 749 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 MAT1AQ00266 395 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 ARHGAP19Q14CB8 494 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 RFX4Q33E94 735 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 GTDC1Q4AE62 458 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 MINDY4Q4G0A6 757 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 TRIQKQ629K1 86 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 TRIM40Q6P9F5 258 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 DHRS13Q6UX07 377 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 TMPRSS11AQ6ZMR5 421 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 TTLL10Q6ZVT0 673 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 KRT74Q7RTS7 529 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 COMMD6Q7Z4G1 85 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 CYP4Z1Q86W10 505 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 TMEM132CQ8N3T6 1108 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 CSNK1A1LQ8N752 337 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 HMGCLL1Q8TB92 370 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 FAM174AQ8TBP5 190 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 OTUB1Q96FW1 271 aaPredicted RBP8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 PSD2Q9BQI7 771 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 SAMHD1Q9Y3Z3 626 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 TRAV6A0A075B6T7 132 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 A0A0J9YY10 115 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 AQP12BA6NM10 295 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 SGK494L7N484 410 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 EEDO75530 441 aaKnown RBP8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 CCNDBP1O95273 360 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 HTR1AP08908 422 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 CKMT1AP12532 417 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 BCKDHAP12694 445 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 GLB1P16278 677 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 TNNI3P19429 210 aa8.16□□□□□ -1.1
LIMCH1-209ENST00000509277 ENPP1P22413 925 aa8.16□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms