RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 GUCA1CO95843 209 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 LYNP07948 512 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 SCG2P13521 617 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 H2AFXP16104 143 aaPredicted RBP1.6□□□□□ -2.15
NUP54-208ENST00000508604 PDGFRAP16234 1089 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 CTRB1P17538 263 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 ARF4P18085 180 aaPredicted RBP1.6□□□□□ -2.15
NUP54-208ENST00000508604 PSMB1P20618 241 aaKnown RBP1.6□□□□□ -2.15
NUP54-208ENST00000508604 M6PRP20645 277 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 ACAT1P24752 427 aaKnown RBP1.6□□□□□ -2.15
NUP54-208ENST00000508604 ANXA13P27216 316 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 EEF1DP29692 281 aaKnown RBP1.6□□□□□ -2.15
NUP54-208ENST00000508604 SOX6P35712 828 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 CBX5P45973 191 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 NPY4RP50391 375 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 RAB28P51157 221 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 PLTPP55058 493 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 RPP38P78345 283 aaKnown RBP1.6□□□□□ -2.15
NUP54-208ENST00000508604 S100A12P80511 92 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 MRPS25P82663 173 aaKnown RBP1.6□□□□□ -2.15
NUP54-208ENST00000508604 IFFO1Q0D2I5 559 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 ASAH1Q13510 395 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 GNA13Q14344 377 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 WHAMMP3Q1A5X7 153 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 MICAQ29983 383 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 WSCD2Q2TBF2 565 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 ODF2Q5BJF6 829 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 HECTD3Q5T447 861 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 AADACL4Q5VUY2 407 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 CTRB2Q6GPI1 263 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 C11orf88Q6PI97 169 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 CNSTQ6PJW8 725 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 C17orf107Q6ZR85 190 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 PPP1R42Q7Z4L9 355 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 NRARPQ7Z6K4 114 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 PHLDB2Q86SQ0 1253 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 NKAIN4Q8IVV8 208 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 FAM9CQ8IZT9 166 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 SYCP3Q8IZU3 236 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 OR13C5Q8NGS8 318 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 C8orf46Q8TAG6 207 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 ENKURQ8TC29 256 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 SRSF12Q8WXF0 261 aaKnown RBP1.6□□□□□ -2.15
NUP54-208ENST00000508604 PEX13Q92968 403 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 EXT2Q93063 718 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 HDAC11Q96DB2 347 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 CNDP1Q96KN2 507 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 SPATA17Q96L03 361 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 ATP6V1G3Q96LB4 118 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 AK8Q96MA6 479 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 SPATA33Q96N06 139 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 ZNF558Q96NG5 402 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 SECISBP2Q96T21 854 aaKnown RBP1.6□□□□□ -2.15
NUP54-208ENST00000508604 COQ7Q99807 217 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 SLC25A23Q9BV35 468 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 KATNB1Q9BVA0 655 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 GLT8D2Q9H1C3 349 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 DPEP3Q9H4B8 488 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 HAUS4Q9H6D7 363 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 UCK1Q9HA47 277 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 DMAP1Q9NPF5 467 aaPredicted RBP1.6□□□□□ -2.15
NUP54-208ENST00000508604 SDHAF3Q9NRP4 125 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 MED17Q9NVC6 651 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 SDAD1Q9NVU7 687 aaKnown RBP eCLIP1.6□□□□□ -2.15
NUP54-208ENST00000508604 MTRRQ9UBK8 725 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 HOOK1Q9UJC3 728 aaKnown RBP1.6□□□□□ -2.15
NUP54-208ENST00000508604 HPCAL4Q9UM19 191 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 CLEC4AQ9UMR7 237 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 EXOC7Q9UPT5 735 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 FADS3Q9Y5Q0 445 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 MROH5Q6ZUA9 1318 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 BAZ1AQ9NRL2 1556 aaPredicted RBP1.6□□□□□ -2.15
NUP54-208ENST00000508604 KIF15Q9NS87 1388 aa1.6□□□□□ -2.15
NUP54-208ENST00000508604 TRAV6A0A075B6T7 132 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 LOC100653049A0A140TA62 436 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 LOC105371267A0A1B0GV96 52 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 CCDC69A6NI79 296 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 ZNF732B4DXR9 585 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 FAM86B1E9PN63 330 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 H0Y626 953 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 H3BQV1 296 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 GOLGA8RI6L899 631 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 L7N2F9 121 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 KMOO15229 486 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 MAPK13O15264 365 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 ZSCAN12O43309 604 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 MGRN1O60291 552 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 KRT34O76011 436 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 GJB5O95377 273 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 TGDSO95455 350 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 NPPAP01160 153 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 KRT14P02533 472 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 APOEP02649 317 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 OPN1MWP04001 364 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 HSPB1P04792 205 aaKnown RBP1.59□□□□□ -2.15
NUP54-208ENST00000508604 FAM86B2P0C5J1 330 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 OPN1MW2P0DN77 364 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 OPN1MW3P0DN78 364 aa1.59□□□□□ -2.15
NUP54-208ENST00000508604 TOP1P11387 765 aaKnown RBP1.59□□□□□ -2.15
NUP54-208ENST00000508604 CPA3P15088 417 aa1.59□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms