RNA–Protein interactions for RNA: ENST00000501271.2

CLIP1-204, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,426 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-204ENST00000501271 RMI1Q9H9A7 625 aa9.25□□□□□ -0.93
CLIP1-204ENST00000501271 TXNL4BQ9NX01 149 aaKnown RBP9.25□□□□□ -0.93
CLIP1-204ENST00000501271 TBC1D24Q9ULP9 559 aa9.25□□□□□ -0.93
CLIP1-204ENST00000501271 NTNG1Q9Y2I2 539 aa9.25□□□□□ -0.93
CLIP1-204ENST00000501271 ISM1B1AKI9 464 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 SYT5O00445 386 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 UBXN7O94888 489 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 ALPPP05187 535 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 CPEP16870 476 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 GSTM3P21266 225 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 CMPK1P30085 196 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 AVPR1BP47901 424 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 RORCP51449 518 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 PSPHP78330 225 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 CEBPEQ15744 281 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 ZNF79Q15937 498 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 PRAMEF8Q5VWM4 474 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 PRAMEF7Q5VXH5 474 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 ZNF776Q68DI1 518 aaPredicted RBP9.24□□□□□ -0.93
CLIP1-204ENST00000501271 SLC27A4Q6P1M0 643 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 FAM111BQ6SJ93 734 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 SHFQ7M4L6 423 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 AKAP14Q86UN6 197 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 YAF2Q8IY57 180 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 FLCNQ8NFG4 579 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 TEX47Q8TBZ9 253 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 TMEM163Q8TC26 289 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 TM9SF4Q92544 642 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 SLC9A6Q92581 669 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 RNFT2Q96EX2 444 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 ABHD8Q96I13 439 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 FAM46AQ96IP4 442 aaKnown RBP9.24□□□□□ -0.93
CLIP1-204ENST00000501271 OR2A14Q96R47 310 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 APOOQ9BUR5 198 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 CCDC32Q9BV29 185 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 RERGLQ9H628 205 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 SSR3Q9UNL2 185 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 SPIN1Q9Y657 262 aaPredicted RBP9.24□□□□□ -0.93
CLIP1-204ENST00000501271 SPTBN5Q9NRC6 3674 aaKnown RBP9.24□□□□□ -0.93
CLIP1-204ENST00000501271 RFXAPO00287 272 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 BTN3A3O00478 584 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 PRODHO43272 600 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 PLRG1O43660 514 aaKnown RBP9.24□□□□□ -0.93
CLIP1-204ENST00000501271 FCMRO60667 390 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 RNGTTO60942 597 aaKnown RBP9.24□□□□□ -0.93
CLIP1-204ENST00000501271 CDRT1O95170 752 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 CLEC2LP0C7M8 214 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 MSL3P1P0C860 447 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 ACP2P11117 423 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 GDI1P31150 447 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 MPIP34949 423 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 CD79BP40259 229 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 MAGEA10P43363 369 aaPredicted RBP9.24□□□□□ -0.93
CLIP1-204ENST00000501271 OMPP47874 163 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 PDX1P52945 283 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 WNT4P56705 351 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 DEFA1P59665 94 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 DEFA3P59666 94 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 BTN3A2P78410 334 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 LRIT3Q3SXY7 679 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 C3orf38Q5JPI3 329 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 TJAP1Q5JTD0 557 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 CLEC12AQ5QGZ9 265 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 C22orf42Q6IC83 251 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 SLC36A4Q6YBV0 504 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 VN1R4Q7Z5H5 301 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 MRGPREQ86SM8 312 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 OR8H2Q8N162 312 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 OR4E2Q8NGC2 313 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 OR9Q1Q8NGQ5 310 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 GNPDA2Q8TDQ7 276 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 GIMAP4Q9NUV9 329 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 TBC1D29Q9UFV1 150 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 MUTYHQ9UIF7 546 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 TRAPPC4Q9Y296 219 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 TICRRQ7Z2Z1 1910 aa9.24□□□□□ -0.93
CLIP1-204ENST00000501271 IQCMA0A1B0GVH7 501 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 A8MU76 341 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 SLC31A1O15431 190 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 ASNA1O43681 348 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 THY1P04216 161 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 ZNF888P0CJ79 500 aaPredicted RBP9.23□□□□□ -0.93
CLIP1-204ENST00000501271 NR2F6P10588 404 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 MYL12AP19105 171 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 AZGP1P25311 298 aaKnown RBP9.23□□□□□ -0.93
CLIP1-204ENST00000501271 CASP3P42574 277 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 KIR2DL1P43626 348 aaPredicted RBP9.23□□□□□ -0.93
CLIP1-204ENST00000501271 TSFMP43897 325 aaKnown RBP9.23□□□□□ -0.93
CLIP1-204ENST00000501271 ARFIP1P53367 373 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 ADPRHP54922 357 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 STXBP1P61764 594 aaKnown RBP9.23□□□□□ -0.93
CLIP1-204ENST00000501271 PPP2CBP62714 309 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 RPS25P62851 125 aaKnown RBP9.23□□□□□ -0.93
CLIP1-204ENST00000501271 PPP2CAP67775 309 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 BNC1Q01954 994 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 TGM3Q08188 693 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 TSPAN31Q12999 210 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 LARS2Q15031 903 aaKnown RBP9.23□□□□□ -0.93
CLIP1-204ENST00000501271 TRAM2Q15035 370 aa9.23□□□□□ -0.93
CLIP1-204ENST00000501271 KCNJ8Q15842 424 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms