RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 PIP5K1BO14986 540 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 SNPHO15079 494 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 LSM1O15116 133 aaKnown RBP13.8□□□□□ -0.2
USP39-217ENST00000491659 HPNP05981 417 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 CT45A8P0DMV1 189 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 CT45A9P0DMV2 189 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 GABRA1P14867 456 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 DDX5P17844 614 aaKnown RBP13.8□□□□□ -0.2
USP39-217ENST00000491659 MAPK1P28482 360 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 CHRNB4P30926 498 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 GPC1P35052 558 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 ASMTP46597 345 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 CDK9P50750 372 aaKnown RBP13.8□□□□□ -0.2
USP39-217ENST00000491659 NUP107P57740 925 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 MRPS22P82650 360 aaKnown RBP13.8□□□□□ -0.2
USP39-217ENST00000491659 PMPCAQ10713 525 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 CDSNQ15517 529 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 PRSS53Q2L4Q9 553 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 RFTN2Q52LD8 501 aaPredicted RBP13.8□□□□□ -0.2
USP39-217ENST00000491659 CT45A2Q5DJT8 189 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 C1orf185Q5T7R7 199 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 FNDC7Q5VTL7 733 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 DESI1Q6ICB0 168 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 NPSR1Q6W5P4 371 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 CROCCP2Q86T23 111 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 SLC44A2Q8IWA5 706 aaPredicted RBP13.8□□□□□ -0.2
USP39-217ENST00000491659 ZFP28Q8NHY6 868 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 PPCDCQ96CD2 204 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 DTNBP1Q96EV8 351 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 ZNF764Q96H86 408 aaPredicted RBP13.8□□□□□ -0.2
USP39-217ENST00000491659 EGLN2Q96KS0 407 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 PPP3R2Q96LZ3 170 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 GNRHR2Q96P88 292 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 TSSK3Q96PN8 268 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 UBQLN3Q9H347 655 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 CENPHQ9H3R5 247 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 REEP4Q9H6H4 257 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 ALKBH4Q9NXW9 302 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 C19orf53Q9UNZ5 99 aaPredicted RBP13.8□□□□□ -0.2
USP39-217ENST00000491659 EXO1Q9UQ84 846 aaKnown RBP13.8□□□□□ -0.2
USP39-217ENST00000491659 RNF6Q9Y252 685 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 PCDHGB3Q9Y5G1 929 aa13.8□□□□□ -0.2
USP39-217ENST00000491659 TMEM114B3SHH9 223 aa13.79□□□□□ -0.2
USP39-217ENST00000491659 PLOD2O00469 737 aa13.79□□□□□ -0.2
USP39-217ENST00000491659 AKAP10O43572 662 aa13.79□□□□□ -0.2
USP39-217ENST00000491659 ICOSLGO75144 302 aa13.79□□□□□ -0.2
USP39-217ENST00000491659 NME6O75414 186 aaPredicted RBP13.79□□□□□ -0.2
USP39-217ENST00000491659 HOXD4P09016 255 aaPredicted RBP13.79□□□□□ -0.2
USP39-217ENST00000491659 IFI6P09912 130 aa13.79□□□□□ -0.2
USP39-217ENST00000491659 MYZAPP0CAP1 466 aa13.79□□□□□ -0.2
USP39-217ENST00000491659 PTPN6P29350 595 aa13.79□□□□□ -0.2
USP39-217ENST00000491659 PTGER4P35408 488 aa13.79□□□□□ -0.2
USP39-217ENST00000491659 GCKP35557 465 aa13.79□□□□□ -0.2
USP39-217ENST00000491659 ETV4P43268 484 aa13.79□□□□□ -0.2
USP39-217ENST00000491659 SERPINB4P48594 390 aa13.79□□□□□ -0.2
USP39-217ENST00000491659 PNLIPRP2P54317 469 aa13.79□□□□□ -0.2
USP39-217ENST00000491659 HSPB3Q12988 150 aa13.79□□□□□ -0.2
USP39-217ENST00000491659 ZNHIT3Q15649 155 aaPredicted RBP13.79□□□□□ -0.2
USP39-217ENST00000491659 UGT3A2Q3SY77 523 aa13.79□□□□□ -0.2
USP39-217ENST00000491659 CEP85LQ5SZL2 805 aa13.79□□□□□ -0.2
USP39-217ENST00000491659 TIGD3Q6B0B8 471 aa13.79□□□□□ -0.2
USP39-217ENST00000491659 LARP4Q71RC2 724 aaKnown RBP eCLIP13.79□□□□□ -0.2
USP39-217ENST00000491659 NUDCD3Q8IVD9 361 aa13.79□□□□□ -0.2
USP39-217ENST00000491659 OR2L13Q8N349 312 aa13.79□□□□□ -0.2
USP39-217ENST00000491659 OR10Q1Q8NGQ4 319 aa13.79□□□□□ -0.2
USP39-217ENST00000491659 CLHC1Q8NHS4 586 aa13.79□□□□□ -0.2
USP39-217ENST00000491659 PKNOX2Q96KN3 472 aa13.79□□□□□ -0.2
USP39-217ENST00000491659 ADOQ96SZ5 270 aa13.79□□□□□ -0.2
USP39-217ENST00000491659 TTYH2Q9BSA4 534 aa13.79□□□□□ -0.2
USP39-217ENST00000491659 GALNT9Q9HCQ5 603 aa13.79□□□□□ -0.2
USP39-217ENST00000491659 SSU72Q9NP77 194 aaKnown RBP13.79□□□□□ -0.2
USP39-217ENST00000491659 SH3BP4Q9P0V3 963 aa13.79□□□□□ -0.2
USP39-217ENST00000491659 FAM215AQ9Y5M1 114 aa13.79□□□□□ -0.2
USP39-217ENST00000491659 CENPEQ02224 2701 aa13.79□□□□□ -0.2
USP39-217ENST00000491659 CACNA1DQ01668 2161 aa13.78□□□□□ -0.2
USP39-217ENST00000491659 FAM90A27PA6NNH2 459 aa13.78□□□□□ -0.2
USP39-217ENST00000491659 FAM47E-STBD1D6RA91 191 aa13.78□□□□□ -0.2
USP39-217ENST00000491659 UPK1AO00322 258 aa13.78□□□□□ -0.2
USP39-217ENST00000491659 TSPAN2O60636 221 aa13.78□□□□□ -0.2
USP39-217ENST00000491659 TBX19O60806 448 aa13.78□□□□□ -0.2
USP39-217ENST00000491659 SKAP2O75563 359 aaPredicted RBP13.78□□□□□ -0.2
USP39-217ENST00000491659 HSPA4LO95757 839 aa13.78□□□□□ -0.2
USP39-217ENST00000491659 SNRPB2P08579 225 aaKnown RBP13.78□□□□□ -0.2
USP39-217ENST00000491659 HPCAL1P37235 193 aa13.78□□□□□ -0.2
USP39-217ENST00000491659 PTGDSP41222 190 aa13.78□□□□□ -0.2
USP39-217ENST00000491659 ATP6AP1LQ52LC2 224 aa13.78□□□□□ -0.2
USP39-217ENST00000491659 XKR7Q5GH72 579 aa13.78□□□□□ -0.2
USP39-217ENST00000491659 ANKRD26P1Q6NSI1 321 aa13.78□□□□□ -0.2
USP39-217ENST00000491659 R3HCC1LQ7Z5L2 792 aaKnown RBP13.78□□□□□ -0.2
USP39-217ENST00000491659 CIDECQ96AQ7 238 aaPredicted RBP13.78□□□□□ -0.2
USP39-217ENST00000491659 EFHD2Q96C19 240 aaPredicted RBP13.78□□□□□ -0.2
USP39-217ENST00000491659 NTNG2Q96CW9 530 aa13.78□□□□□ -0.2
USP39-217ENST00000491659 MTERF3Q96E29 417 aa13.78□□□□□ -0.2
USP39-217ENST00000491659 ELP4Q96EB1 424 aa13.78□□□□□ -0.2
USP39-217ENST00000491659 ZBED6CLQ96FA7 236 aaPredicted RBP13.78□□□□□ -0.2
USP39-217ENST00000491659 ZIM3Q96PE6 472 aa13.78□□□□□ -0.2
USP39-217ENST00000491659 Q9N2J8 555 aa13.78□□□□□ -0.2
USP39-217ENST00000491659 MRTO4Q9UKD2 239 aaKnown RBP13.78□□□□□ -0.2
USP39-217ENST00000491659 MAPRE3Q9UPY8 281 aa13.78□□□□□ -0.2
USP39-217ENST00000491659 WIF1Q9Y5W5 379 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms