RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 APOBEC3BQ9UH17 382 aaKnown RBP13.8□□□□□ -0.2
HDAC6-220ENST00000477528 PCDHGB6Q9Y5F9 930 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 CDH10Q9Y6N8 788 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 AGAP5A6NIR3 686 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 CPNE6O95741 557 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 PTGER1P34995 402 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 RNF144AP50876 292 aaPredicted RBP13.8□□□□□ -0.2
HDAC6-220ENST00000477528 FAM83HQ6ZRV2 1179 aaPredicted RBP13.8□□□□□ -0.2
HDAC6-220ENST00000477528 MFSD9Q8NBP5 474 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 RNF31Q96EP0 1072 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 OR7D2Q96RA2 312 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 UPK1BO75841 260 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 AIFM1O95831 613 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 RLN1P04808 185 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 PEPDP12955 493 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 JUNDP17535 347 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 AK4P27144 223 aaPredicted RBP13.8□□□□□ -0.2
HDAC6-220ENST00000477528 DNASE1L1P49184 302 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 CTBSQ01459 385 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 IHHQ14623 411 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 SYT6Q5T7P8 510 aaPredicted RBP13.8□□□□□ -0.2
HDAC6-220ENST00000477528 TOMM5Q8N4H5 51 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 TRIM43Q96BQ3 446 aaPredicted RBP13.8□□□□□ -0.2
HDAC6-220ENST00000477528 PHOX2BQ99453 314 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 SGPP1Q9BX95 441 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 OR8D2Q9GZM6 311 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 NEK6Q9HC98 313 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 ERVK13-1Q9NX77 482 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 CCDC59Q9P031 241 aaKnown RBP13.8□□□□□ -0.2
HDAC6-220ENST00000477528 BAIAP2Q9UQB8 552 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 GABARAPO95166 117 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 GSTT2BP0CG30 244 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 HHEXQ03014 270 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 METRNLQ641Q3 311 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 RPTNQ6XPR3 784 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 PLA2G15Q8NCC3 412 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 ADAMTS18Q8TE60 1221 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 ACOT11Q8WXI4 607 aaPredicted RBP13.8□□□□□ -0.2
HDAC6-220ENST00000477528 FKBP7Q9Y680 259 aa13.8□□□□□ -0.2
HDAC6-220ENST00000477528 KIAA0100Q14667 2235 aaKnown RBP13.8□□□□□ -0.2
HDAC6-220ENST00000477528 CCDC85CA6NKD9 419 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 PRRT4C9JH25 899 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 SOX9P48436 509 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 RAB40BQ12829 278 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 POU4F2Q12837 409 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 ARHGAP11AQ6P4F7 1023 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 PMEPA1Q969W9 287 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 ITPKCQ96DU7 683 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 ASB16Q96NS5 453 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 NT5DC2Q9H857 520 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 NFKBIL1Q9UBC1 381 aaPredicted RBP13.79□□□□□ -0.2
HDAC6-220ENST00000477528 PLPP1O14494 284 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 MAP4K2Q12851 820 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 SLC44A3Q8N4M1 653 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 YIPF7Q8N8F6 280 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 ZFP41Q8N8Y5 198 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 ZDHHC12Q96GR4 267 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 BTBD2Q9BX70 525 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 SLC7A7Q9UM01 511 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 GRIP1Q9Y3R0 1128 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 WISP3O95389 354 aaPredicted RBP13.79□□□□□ -0.2
HDAC6-220ENST00000477528 SOX3P41225 446 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 CSNK1G2P78368 415 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 CRYZQ08257 329 aaKnown RBP13.79□□□□□ -0.2
HDAC6-220ENST00000477528 LEXMQ3ZCV2 418 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 ARHGAP40Q5TG30 622 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 PLBD1Q6P4A8 553 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 ZNF619Q8N2I2 560 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 RPL3LQ92901 407 aaKnown RBP13.79□□□□□ -0.2
HDAC6-220ENST00000477528 RIT1Q92963 219 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 EFHD2Q96C19 240 aaPredicted RBP13.79□□□□□ -0.2
HDAC6-220ENST00000477528 SAMD8Q96LT4 415 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 PTCHD1Q96NR3 888 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 WACQ9BTA9 647 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 SAP130Q9H0E3 1048 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 ZFR2Q9UPR6 939 aaKnown RBP13.79□□□□□ -0.2
HDAC6-220ENST00000477528 LOC285556D6RIA3 1793 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 FLRT2O43155 660 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 RPP14O95059 124 aaKnown RBP13.79□□□□□ -0.2
HDAC6-220ENST00000477528 CTSLP07711 333 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 CCKBRP32239 447 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 TNFRSF4P43489 277 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 NFATC4Q14934 902 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 LILRA6Q6PI73 481 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 RHOXF1Q8NHV9 184 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 SGTBQ96EQ0 304 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 PDE7BQ9NP56 450 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 EXTL2Q9UBQ6 330 aa13.79□□□□□ -0.2
HDAC6-220ENST00000477528 GXYLT2A0PJZ3 443 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 YES1P07947 543 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 THEGLP0DJG4 465 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 ADORA3P0DMS8 318 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 GIPRP48546 466 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 CTU2Q2VPK5 515 aaKnown RBP13.78□□□□□ -0.2
HDAC6-220ENST00000477528 SHFQ7M4L6 423 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 FAM217AQ8IXS0 508 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 METTL27Q8N6F8 245 aaPredicted RBP13.78□□□□□ -0.2
HDAC6-220ENST00000477528 GRPEL2Q8TAA5 225 aa13.78□□□□□ -0.2
HDAC6-220ENST00000477528 TMEM121BQ9BXQ6 578 aaPredicted RBP13.78□□□□□ -0.2
HDAC6-220ENST00000477528 HDHD5Q9BXW7 423 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms