RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 SLC38A5Q8WUX1 472 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 STARD8Q92502 1023 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 ZNF486Q96H40 463 aaPredicted RBP4.71□□□□□ -1.66
CCDC39-204ENST00000476379 MCHR1Q99705 422 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 DDX31Q9H8H2 851 aaKnown RBP4.71□□□□□ -1.66
CCDC39-204ENST00000476379 ELL3Q9HB65 397 aaPredicted RBP4.71□□□□□ -1.66
CCDC39-204ENST00000476379 SRA1Q9HD15 236 aaKnown RBP4.71□□□□□ -1.66
CCDC39-204ENST00000476379 MRPS30Q9NP92 439 aaKnown RBP4.71□□□□□ -1.66
CCDC39-204ENST00000476379 ENAMQ9NRM1 1142 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 QPCTLQ9NXS2 382 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 TUBA8Q9NY65 449 aaPredicted RBP4.71□□□□□ -1.66
CCDC39-204ENST00000476379 GNG8Q9UK08 70 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 CNOT11Q9UKZ1 510 aaKnown RBP4.71□□□□□ -1.66
CCDC39-204ENST00000476379 POFUT2Q9Y2G5 429 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 MAU2Q9Y6X3 613 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 RELNP78509 3460 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 SLC33A1O00400 549 aaPredicted RBP4.71□□□□□ -1.66
CCDC39-204ENST00000476379 SOCS6O14544 535 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 ANKRD28O15084 1053 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 SDC3O75056 442 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 SLITRK5O94991 958 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 DBIP07108 87 aaKnown RBP4.71□□□□□ -1.66
CCDC39-204ENST00000476379 LINC00271P0C7V0 271 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 PRKAR1AP10644 381 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 ACADMP11310 421 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 PPM1AP35813 382 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 RAB14P61106 215 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 SELENOWP63302 87 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 SLC35A2P78381 396 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 GSTM4Q03013 218 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 P2RY14Q15391 338 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 NDUFAF6Q330K2 333 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 GPR33Q49SQ1 333 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 SLC25A25Q6KCM7 469 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 PODNL1Q6PEZ8 512 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 ELMOD2Q8IZ81 293 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 LRRC17Q8N6Y2 441 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 COX18Q8N8Q8 333 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 ASCC1Q8N9N2 400 aaKnown RBP4.71□□□□□ -1.66
CCDC39-204ENST00000476379 OR6T1Q8NGN1 323 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 OR2A12Q8NGT7 310 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 RHOXF1Q8NHV9 184 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 SUN5Q8TC36 379 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 ASB11Q8WXH4 323 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 PTCHD1Q96NR3 888 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 PIP5K1AQ99755 562 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 ZNF717Q9BY31 904 aaPredicted RBP4.71□□□□□ -1.66
CCDC39-204ENST00000476379 ATP13A2Q9NQ11 1180 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 CFL2Q9Y281 166 aa4.71□□□□□ -1.66
CCDC39-204ENST00000476379 MAP1AP78559 2803 aaPredicted RBP4.71□□□□□ -1.66
CCDC39-204ENST00000476379 COL4A3Q01955 1670 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 FXYD6-FXYD2A0A087WZ82 144 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 MEIOCA2RUB1 952 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 CASC3O15234 703 aaKnown RBP4.7□□□□□ -1.66
CCDC39-204ENST00000476379 SIGLEC5O15389 551 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 KCNK2O95069 426 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 CD160O95971 181 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 ARL4DP49703 201 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 PNLIPRP1P54315 467 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 CHRNEQ04844 493 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 ZNF91Q05481 1191 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 SIGLEC14Q08ET2 396 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 RBBP4Q09028 425 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 GRSF1Q12849 480 aaKnown RBP eCLIP4.7□□□□□ -1.66
CCDC39-204ENST00000476379 XKR4Q5GH76 650 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 LCN1P1Q5VSP4 162 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 FRMPD2BQ6IN97 320 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 CCDC80Q76M96 950 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 TSPYL5Q86VY4 417 aaPredicted RBP4.7□□□□□ -1.66
CCDC39-204ENST00000476379 PTOV1Q86YD1 416 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 SFTPA2Q8IWL1 248 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 CDK20Q8IZL9 346 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 OR9A1PQ8NGU1 263 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 SLC7A13Q8TCU3 470 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 UFD1Q92890 307 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 NXPE3Q969Y0 559 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 FRMD6Q96NE9 622 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 NTMT1Q9BV86 223 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 KLF16Q9BXK1 252 aaPredicted RBP4.7□□□□□ -1.66
CCDC39-204ENST00000476379 FXYD6Q9H0Q3 95 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 OR10A4Q9H209 315 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 MUC13Q9H3R2 512 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 KLHL31Q9H511 634 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 C6orf106Q9H6K1 298 aaPredicted RBP4.7□□□□□ -1.66
CCDC39-204ENST00000476379 SYNPO2LQ9H987 977 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 PDFQ9HBH1 243 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 SPHK2Q9NRA0 654 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 EVA1BQ9NVM1 165 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 FBXL12Q9NXK8 326 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 TNFRSF10DQ9UBN6 386 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 TRPS1Q9UHF7 1281 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 ERVW-1Q9UQF0 538 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 SPEF1Q9Y4P9 236 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 KCNE3Q9Y6H6 103 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 CACNA1BQ00975 2339 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 NOTCH2Q04721 2471 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 GXYLT2A0PJZ3 443 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 C2CD4DB7Z1M9 353 aa4.7□□□□□ -1.66
CCDC39-204ENST00000476379 CAPN5O15484 640 aaPredicted RBP4.7□□□□□ -1.66
CCDC39-204ENST00000476379 AP1G1O43747 822 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms