RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 CEACAM8P31997 349 aaPredicted RBP12.85□□□□□ -0.35
UPF3A-204ENST00000475218 MASP1P48740 699 aa12.85□□□□□ -0.35
UPF3A-204ENST00000475218 GAS1P54826 345 aa12.85□□□□□ -0.35
UPF3A-204ENST00000475218 VSNL1P62760 191 aa12.85□□□□□ -0.35
UPF3A-204ENST00000475218 PSG6Q00889 435 aa12.85□□□□□ -0.35
UPF3A-204ENST00000475218 C2orf80Q0P641 193 aa12.85□□□□□ -0.35
UPF3A-204ENST00000475218 SNTA1Q13424 505 aa12.85□□□□□ -0.35
UPF3A-204ENST00000475218 NOXRED1Q6NXP6 359 aa12.85□□□□□ -0.35
UPF3A-204ENST00000475218 SLC30A6Q6NXT4 461 aa12.85□□□□□ -0.35
UPF3A-204ENST00000475218 YRDCQ86U90 279 aaKnown RBP12.85□□□□□ -0.35
UPF3A-204ENST00000475218 LIX1Q8N485 282 aa12.85□□□□□ -0.35
UPF3A-204ENST00000475218 COL21A1Q96P44 957 aa12.85□□□□□ -0.35
UPF3A-204ENST00000475218 GATA5Q9BWX5 397 aaPredicted RBP12.85□□□□□ -0.35
UPF3A-204ENST00000475218 PPCSQ9HAB8 311 aa12.85□□□□□ -0.35
UPF3A-204ENST00000475218 SERHLQ9NQF3 203 aa12.85□□□□□ -0.35
UPF3A-204ENST00000475218 PFDN4Q9NQP4 134 aa12.85□□□□□ -0.35
UPF3A-204ENST00000475218 MAPRE3Q9UPY8 281 aa12.85□□□□□ -0.35
UPF3A-204ENST00000475218 CCDC151A5D8V7 595 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 PRAMEF25A6NGN4 478 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 NPIPB8E9PQR5 432 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 CDH16O75309 829 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 ERN1O75460 977 aaKnown RBP12.84□□□□□ -0.35
UPF3A-204ENST00000475218 RSL1D1O76021 490 aaKnown RBP12.84□□□□□ -0.35
UPF3A-204ENST00000475218 EPPINO95925 133 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 JUNP05412 331 aaKnown RBP12.84□□□□□ -0.35
UPF3A-204ENST00000475218 ELAVL4P26378 380 aaKnown RBP12.84□□□□□ -0.35
UPF3A-204ENST00000475218 GSTM5P46439 218 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 CCT5P48643 541 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 LIPMQ5VYY2 423 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 Q6ZSR9 355 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 CNPY4Q8N129 248 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 OR1J4Q8NGS1 313 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 FCRL1Q96LA6 429 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 ADOQ96SZ5 270 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 RTN4RQ9BZR6 473 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 GLIPR2Q9H4G4 154 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 MKS1Q9NXB0 559 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 FBXL2Q9UKC9 423 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 L3MBTL1Q9Y468 752 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 DOCK7Q96N67 2140 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 AHRRA9YTQ3 701 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 COPEO14579 308 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 UROSP10746 265 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 PRPH2P23942 346 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 MC3RP41968 323 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 RPP38P78345 283 aaKnown RBP12.84□□□□□ -0.35
UPF3A-204ENST00000475218 DMTNQ08495 405 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 SNTB1Q13884 538 aaKnown RBP12.84□□□□□ -0.35
UPF3A-204ENST00000475218 SAMD14Q8IZD0 417 aaPredicted RBP12.84□□□□□ -0.35
UPF3A-204ENST00000475218 FAM9CQ8IZT9 166 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 BANPQ8N9N5 519 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 CDC26Q8NHZ8 85 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 FAM76AQ8TAV0 307 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 AMDHD1Q96NU7 426 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 G6PC3Q9BUM1 346 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 OR2B2Q9GZK3 357 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 FLRT3Q9NZU0 649 aa12.84□□□□□ -0.35
UPF3A-204ENST00000475218 SPG11Q96JI7 2443 aa12.83□□□□□ -0.36
UPF3A-204ENST00000475218 PCNX3Q9H6A9 2034 aa12.83□□□□□ -0.36
UPF3A-204ENST00000475218 A0A087WV62 115 aa12.83□□□□□ -0.36
UPF3A-204ENST00000475218 H3BQF6 201 aa12.83□□□□□ -0.36
UPF3A-204ENST00000475218 UPK1AO00322 258 aa12.83□□□□□ -0.36
UPF3A-204ENST00000475218 PLOD2O00469 737 aa12.83□□□□□ -0.36
UPF3A-204ENST00000475218 REM1O75628 298 aa12.83□□□□□ -0.36
UPF3A-204ENST00000475218 BCAS2O75934 225 aaPredicted RBP12.83□□□□□ -0.36
UPF3A-204ENST00000475218 CHRNGP07510 517 aa12.83□□□□□ -0.36
UPF3A-204ENST00000475218 ARRB2P32121 409 aa12.83□□□□□ -0.36
UPF3A-204ENST00000475218 MPIP34949 423 aa12.83□□□□□ -0.36
UPF3A-204ENST00000475218 ZNF136P52737 540 aa12.83□□□□□ -0.36
UPF3A-204ENST00000475218 GFRA1P56159 465 aa12.83□□□□□ -0.36
UPF3A-204ENST00000475218 NAA20P61599 178 aa12.83□□□□□ -0.36
UPF3A-204ENST00000475218 IMPG1Q17R60 797 aa12.83□□□□□ -0.36
UPF3A-204ENST00000475218 UGT3A2Q3SY77 523 aa12.83□□□□□ -0.36
UPF3A-204ENST00000475218 ZNF385BQ569K4 471 aa12.83□□□□□ -0.36
UPF3A-204ENST00000475218 CFAP157Q5JU67 520 aa12.83□□□□□ -0.36
UPF3A-204ENST00000475218 NSUN5P2Q63ZY6 315 aa12.83□□□□□ -0.36
UPF3A-204ENST00000475218 TMEM107Q6UX40 140 aa12.83□□□□□ -0.36
UPF3A-204ENST00000475218 WDR53Q7Z5U6 358 aaPredicted RBP12.83□□□□□ -0.36
UPF3A-204ENST00000475218 TRABD2AQ86V40 505 aa12.83□□□□□ -0.36
UPF3A-204ENST00000475218 SLC44A2Q8IWA5 706 aaPredicted RBP12.83□□□□□ -0.36
UPF3A-204ENST00000475218 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP12.83□□□□□ -0.361e-6■■□□□ 11.4
UPF3A-204ENST00000475218 BBS4Q96RK4 519 aa12.83□□□□□ -0.36
UPF3A-204ENST00000475218 SH3GL2Q99962 352 aa12.83□□□□□ -0.36
UPF3A-204ENST00000475218 KLRF1Q9NZS2 232 aa12.83□□□□□ -0.36
UPF3A-204ENST00000475218 SLC17A7Q9P2U7 560 aa12.83□□□□□ -0.36
UPF3A-204ENST00000475218 C19orf53Q9UNZ5 99 aaPredicted RBP12.83□□□□□ -0.36
UPF3A-204ENST00000475218 TMEM233B4DJY2 109 aa12.82□□□□□ -0.36
UPF3A-204ENST00000475218 NUDT17P0C025 328 aa12.82□□□□□ -0.36
UPF3A-204ENST00000475218 CREB1P16220 341 aa12.82□□□□□ -0.36
UPF3A-204ENST00000475218 ALDH3A1P30838 453 aa12.82□□□□□ -0.36
UPF3A-204ENST00000475218 TIMP3P35625 211 aa12.82□□□□□ -0.36
UPF3A-204ENST00000475218 NCBP2P52298 156 aaKnown RBP eCLIP12.82□□□□□ -0.36
UPF3A-204ENST00000475218 MAP1AP78559 2803 aaPredicted RBP12.82□□□□□ -0.36
UPF3A-204ENST00000475218 TOMM20Q15388 145 aa12.82□□□□□ -0.36
UPF3A-204ENST00000475218 TESK1Q15569 626 aa12.82□□□□□ -0.36
UPF3A-204ENST00000475218 ERCC6LQ2NKX8 1250 aa12.82□□□□□ -0.36
UPF3A-204ENST00000475218 SLC25A35Q3KQZ1 300 aa12.82□□□□□ -0.36
UPF3A-204ENST00000475218 KANK2Q63ZY3 851 aa12.82□□□□□ -0.36
UPF3A-204ENST00000475218 OR5M10Q6IEU7 315 aa12.82□□□□□ -0.36
UPF3A-204ENST00000475218 ANKRD26P1Q6NSI1 321 aa12.82□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms