RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 RNF130Q86XS8 419 aa13.65□□□□□ -0.22
COL9A3-209ENST00000469852 SLC44A2Q8IWA5 706 aaPredicted RBP13.65□□□□□ -0.22
COL9A3-209ENST00000469852 LGI4Q8N135 537 aa13.65□□□□□ -0.22
COL9A3-209ENST00000469852 C10orf111Q8N326 155 aa13.65□□□□□ -0.22
COL9A3-209ENST00000469852 C17orf47Q8NEP4 570 aa13.65□□□□□ -0.22
COL9A3-209ENST00000469852 RP9Q8TA86 221 aaKnown RBP13.65□□□□□ -0.22
COL9A3-209ENST00000469852 SLC9A6Q92581 669 aa13.65□□□□□ -0.22
COL9A3-209ENST00000469852 TP53INP1Q96A56 240 aa13.65□□□□□ -0.22
COL9A3-209ENST00000469852 SLC35A4Q96G79 324 aa13.65□□□□□ -0.22
COL9A3-209ENST00000469852 LCORQ96JN0 433 aaPredicted RBP13.65□□□□□ -0.22
COL9A3-209ENST00000469852 SLC35G5Q96KT7 338 aa13.65□□□□□ -0.22
COL9A3-209ENST00000469852 ARHGAP9Q9BRR9 750 aa13.65□□□□□ -0.22
COL9A3-209ENST00000469852 SLC39A3Q9BRY0 314 aa13.65□□□□□ -0.22
COL9A3-209ENST00000469852 IKZF5Q9H5V7 419 aa13.65□□□□□ -0.22
COL9A3-209ENST00000469852 YARS2Q9Y2Z4 477 aaKnown RBP13.65□□□□□ -0.22
COL9A3-209ENST00000469852 UNC5CO95185 931 aa13.64□□□□□ -0.23
COL9A3-209ENST00000469852 KCNH1O95259 989 aa13.64□□□□□ -0.23
COL9A3-209ENST00000469852 IGKV1D-16P01601 117 aa13.64□□□□□ -0.23
COL9A3-209ENST00000469852 MATN1P21941 496 aa13.64□□□□□ -0.23
COL9A3-209ENST00000469852 GABRA3P34903 492 aa13.64□□□□□ -0.23
COL9A3-209ENST00000469852 CPA2P48052 419 aa13.64□□□□□ -0.23
COL9A3-209ENST00000469852 SSR4P51571 173 aa13.64□□□□□ -0.23
COL9A3-209ENST00000469852 TUBA3CQ13748 450 aa13.64□□□□□ -0.23
COL9A3-209ENST00000469852 NFYCQ13952 458 aa13.64□□□□□ -0.23
COL9A3-209ENST00000469852 SELPLGQ14242 412 aa13.64□□□□□ -0.23
COL9A3-209ENST00000469852 FAM91A1Q658Y4 838 aa13.64□□□□□ -0.23
COL9A3-209ENST00000469852 CDC73Q6P1J9 531 aa13.64□□□□□ -0.23
COL9A3-209ENST00000469852 TNFAIP8L2Q6P589 184 aaPredicted RBP13.64□□□□□ -0.23
COL9A3-209ENST00000469852 TUBA3EQ6PEY2 450 aa13.64□□□□□ -0.23
COL9A3-209ENST00000469852 GALNT10Q86SR1 603 aa13.64□□□□□ -0.23
COL9A3-209ENST00000469852 HORMAD2Q8N7B1 307 aa13.64□□□□□ -0.23
COL9A3-209ENST00000469852 TRIML2Q8N7C3 387 aa13.64□□□□□ -0.23
COL9A3-209ENST00000469852 CDRT4Q8N9R6 151 aa13.64□□□□□ -0.23
COL9A3-209ENST00000469852 CATSPER1Q8NEC5 780 aa13.64□□□□□ -0.23
COL9A3-209ENST00000469852 SLC39A7Q92504 469 aa13.64□□□□□ -0.23
COL9A3-209ENST00000469852 JADE3Q92613 823 aa13.64□□□□□ -0.23
COL9A3-209ENST00000469852 CDS1Q92903 461 aa13.64□□□□□ -0.23
COL9A3-209ENST00000469852 SIGLEC12Q96PQ1 595 aa13.64□□□□□ -0.23
COL9A3-209ENST00000469852 OR7D2Q96RA2 312 aa13.64□□□□□ -0.23
COL9A3-209ENST00000469852 ACTRT3Q9BYD9 372 aa13.64□□□□□ -0.23
COL9A3-209ENST00000469852 OR51I1Q9H343 314 aa13.64□□□□□ -0.23
COL9A3-209ENST00000469852 TPT1P8Q9HAU6 139 aa13.64□□□□□ -0.23
COL9A3-209ENST00000469852 ZNF71Q9NQZ8 489 aaPredicted RBP13.64□□□□□ -0.23
COL9A3-209ENST00000469852 FBXO34Q9NWN3 711 aa13.64□□□□□ -0.23
COL9A3-209ENST00000469852 TEKT2Q9UIF3 430 aa13.64□□□□□ -0.23
COL9A3-209ENST00000469852 CNTRLQ7Z7A1 2325 aa13.64□□□□□ -0.23
COL9A3-209ENST00000469852 PRAMEF27A3QJZ7 478 aa13.63□□□□□ -0.23
COL9A3-209ENST00000469852 BBIP1A8MTZ0 92 aa13.63□□□□□ -0.23
COL9A3-209ENST00000469852 TO15178 435 aa13.63□□□□□ -0.23
COL9A3-209ENST00000469852 ZIC2O95409 532 aaPredicted RBP13.63□□□□□ -0.23
COL9A3-209ENST00000469852 ABCD3P28288 659 aa13.63□□□□□ -0.23
COL9A3-209ENST00000469852 TRHRP34981 398 aaPredicted RBP13.63□□□□□ -0.23
COL9A3-209ENST00000469852 CD96P40200 585 aa13.63□□□□□ -0.23
COL9A3-209ENST00000469852 PRIM2P49643 509 aa13.63□□□□□ -0.23
COL9A3-209ENST00000469852 DCAF7P61962 342 aa13.63□□□□□ -0.23
COL9A3-209ENST00000469852 LY6DQ14210 128 aa13.63□□□□□ -0.23
COL9A3-209ENST00000469852 TRMT5Q32P41 509 aaKnown RBP13.63□□□□□ -0.23
COL9A3-209ENST00000469852 MMEL1Q495T6 779 aa13.63□□□□□ -0.23
COL9A3-209ENST00000469852 RUNDC3AQ59EK9 446 aa13.63□□□□□ -0.23
COL9A3-209ENST00000469852 COQ5Q5HYK3 327 aa13.63□□□□□ -0.23
COL9A3-209ENST00000469852 DDX59Q5T1V6 619 aaKnown RBP eCLIP13.63□□□□□ -0.233e-11■■□□□ 11.4
COL9A3-209ENST00000469852 ANGPTL8Q6UXH0 198 aa13.63□□□□□ -0.23
COL9A3-209ENST00000469852 IL20RBQ6UXL0 311 aa13.63□□□□□ -0.23
COL9A3-209ENST00000469852 OLIG3Q7RTU3 272 aa13.63□□□□□ -0.23
COL9A3-209ENST00000469852 C9orf43Q8TAL5 461 aaPredicted RBP13.63□□□□□ -0.23
COL9A3-209ENST00000469852 MIPOL1Q8TD10 442 aa13.63□□□□□ -0.23
COL9A3-209ENST00000469852 GPR151Q8TDV0 419 aa13.63□□□□□ -0.23
COL9A3-209ENST00000469852 RAB8BQ92930 207 aa13.63□□□□□ -0.23
COL9A3-209ENST00000469852 TMBIM1Q969X1 311 aa13.63□□□□□ -0.23
COL9A3-209ENST00000469852 OMA1Q96E52 524 aa13.63□□□□□ -0.23
COL9A3-209ENST00000469852 HSPBAP1Q96EW2 488 aa13.63□□□□□ -0.23
COL9A3-209ENST00000469852 CGREF1Q99674 301 aa13.63□□□□□ -0.23
COL9A3-209ENST00000469852 CPPED1Q9BRF8 314 aaPredicted RBP13.63□□□□□ -0.23
COL9A3-209ENST00000469852 FAF1Q9UNN5 650 aaPredicted RBP13.63□□□□□ -0.23
COL9A3-209ENST00000469852 NPFFR2Q9Y5X5 522 aa13.63□□□□□ -0.23
COL9A3-209ENST00000469852 EML6Q6ZMW3 1958 aa13.63□□□□□ -0.23
COL9A3-209ENST00000469852 SETXQ7Z333 2677 aaKnown RBP13.62□□□□□ -0.23
COL9A3-209ENST00000469852 ERVH48-1M5A8F1 160 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 CLIC1O00299 241 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 HMGN4O00479 90 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 AIM2O14862 343 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 ACOX3O15254 700 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 CBX6O95503 412 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 ALOX5P09917 674 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 FBXO45P0C2W1 286 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 OR12D1P0DN82 309 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 ETFAP13804 333 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 PRDX6P30041 224 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 HLCSP50747 726 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 FBXW4P57775 412 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 PLCXD2Q0VAA5 305 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 C19orf57Q0VDD7 668 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 FUT5Q11128 374 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 STX5Q13190 355 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 ZNHIT3Q15649 155 aaPredicted RBP13.62□□□□□ -0.23
COL9A3-209ENST00000469852 ZNF791Q3KP31 576 aaPredicted RBP13.62□□□□□ -0.23
COL9A3-209ENST00000469852 COLEC12Q5KU26 742 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 CCNJQ5T5M9 372 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 SPINK14Q6IE38 97 aa13.62□□□□□ -0.23
COL9A3-209ENST00000469852 ZCCHC12Q6PEW1 402 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms