RNA–Protein interactions for RNA: ENST00000466192.5

COL9A3-205, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 2,194 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-205ENST00000466192 FOXS1O43638 330 aa17.07■□□□□ 0.32
COL9A3-205ENST00000466192 ZIC2O95409 532 aaPredicted RBP17.07■□□□□ 0.32
COL9A3-205ENST00000466192 TMBIM6P55061 237 aa17.07■□□□□ 0.32
COL9A3-205ENST00000466192 GP2P55259 537 aaKnown RBP17.07■□□□□ 0.32
COL9A3-205ENST00000466192 BNIP3Q12983 259 aa17.07■□□□□ 0.32
COL9A3-205ENST00000466192 PTGES3Q15185 160 aaKnown RBP17.07■□□□□ 0.32
COL9A3-205ENST00000466192 FAM214AQ32MH5 1076 aa17.07■□□□□ 0.32
COL9A3-205ENST00000466192 TMEM236Q5W0B7 351 aa17.07■□□□□ 0.32
COL9A3-205ENST00000466192 HEPHL1Q6MZM0 1159 aa17.07■□□□□ 0.32
COL9A3-205ENST00000466192 CCDC81Q6ZN84 652 aa17.07■□□□□ 0.32
COL9A3-205ENST00000466192 C16orf62Q7Z3J2 963 aa17.07■□□□□ 0.32
COL9A3-205ENST00000466192 CCDC103Q8IW40 242 aa17.07■□□□□ 0.32
COL9A3-205ENST00000466192 SLC25A45Q8N413 288 aa17.07■□□□□ 0.32
COL9A3-205ENST00000466192 FAR1Q8WVX9 515 aa17.07■□□□□ 0.32
COL9A3-205ENST00000466192 SLC9A6Q92581 669 aa17.07■□□□□ 0.32
COL9A3-205ENST00000466192 CDS1Q92903 461 aa17.07■□□□□ 0.32
COL9A3-205ENST00000466192 TMEM9Q9P0T7 183 aa17.07■□□□□ 0.32
COL9A3-205ENST00000466192 LRIT1Q9P2V4 623 aa17.07■□□□□ 0.32
COL9A3-205ENST00000466192 ACAD8Q9UKU7 415 aa17.07■□□□□ 0.32
COL9A3-205ENST00000466192 C19orf53Q9UNZ5 99 aaPredicted RBP17.07■□□□□ 0.32
COL9A3-205ENST00000466192 PCDHGB1Q9Y5G3 927 aa17.07■□□□□ 0.32
COL9A3-205ENST00000466192 TLCD2A6NGC4 264 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 ZNF99A8MXY4 864 aaPredicted RBP17.06■□□□□ 0.32
COL9A3-205ENST00000466192 RGS10O43665 173 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 OR10H3O60404 316 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 TPST2O60704 377 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 LGI1O95970 557 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 MT-ND2P03891 347 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 NT5EP21589 574 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 ATAD3BQ5T9A4 648 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 PARP8Q8N3A8 854 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 OR6T1Q8NGN1 323 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 DHRS1Q96LJ7 313 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 ZNF285Q96NJ3 590 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 AMBNQ9NP70 447 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 A4GNTQ9UNA3 340 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 SLC9A8Q9Y2E8 581 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 TNRC6BQ9UPQ9 1833 aaKnown RBP17.06■□□□□ 0.32
COL9A3-205ENST00000466192 DUXAA6NLW8 204 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 M0R129 80 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 FCMRO60667 390 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 UGT2B17O75795 530 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 FADS2O95864 444 aaKnown RBP17.06■□□□□ 0.32
COL9A3-205ENST00000466192 MLLT3P42568 568 aaPredicted RBP17.06■□□□□ 0.32
COL9A3-205ENST00000466192 PDX1P52945 283 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 MGAT2Q10469 447 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 SRSF5Q13243 272 aaKnown RBP17.06■□□□□ 0.32
COL9A3-205ENST00000466192 DUSP5Q16690 384 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 PRICKLE4Q2TBC4 344 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 RHOXF1Q8NHV9 184 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 SLC7A13Q8TCU3 470 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 FUNDC2Q9BWH2 189 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 RBCK1Q9BYM8 510 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 SOHLH2Q9NX45 425 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 MAT2BQ9NZL9 334 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 HCN3Q9P1Z3 774 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 KLHL3Q9UH77 587 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 SLC6A14Q9UN76 642 aa17.06■□□□□ 0.32
COL9A3-205ENST00000466192 ZBTB11O95625 1053 aaPredicted RBP17.05■□□□□ 0.32
COL9A3-205ENST00000466192 PDGFBP01127 241 aaPredicted RBP17.05■□□□□ 0.32
COL9A3-205ENST00000466192 CT62P0C5K7 136 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 ACP2P11117 423 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 CHMP24386 653 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 POU1F1P28069 291 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 EPHA4P54764 986 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 OR1D5P58170 312 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 MLIPQ5VWP3 458 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 RAB2BQ8WUD1 216 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 RORBQ92753 470 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 PINK1Q9BXM7 581 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 RAB33BQ9H082 229 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 CCNB1IP1Q9NPC3 277 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 ADAP2Q9NPF8 381 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 CTPS2Q9NRF8 586 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 IMPAD1Q9NX62 359 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 ZNF226Q9NYT6 803 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 CALML5Q9NZT1 146 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 EPHA6Q9UF33 1036 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 PLCL2Q9UPR0 1127 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 A0A087WV62 115 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 CASC3O15234 703 aaKnown RBP17.05■□□□□ 0.32
COL9A3-205ENST00000466192 PLOD3O60568 738 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 ALPPP05187 535 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 GIMD1P0DJR0 217 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 CCNA2P20248 432 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 NR4A1P22736 598 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 CTSKP43235 329 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 MASP1P48740 699 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 FNTBP49356 437 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 NUDT6P53370 316 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 ZNF311Q5JNZ3 666 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 VRK2Q86Y07 508 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 TIMMDC1Q9NPL8 285 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 ENOPH1Q9UHY7 261 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 CHST2Q9Y4C5 530 aa17.05■□□□□ 0.32
COL9A3-205ENST00000466192 HYKKA2RU49 373 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 FAAHO00519 579 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 MAT1AQ00266 395 aaKnown RBP17.04■□□□□ 0.32
COL9A3-205ENST00000466192 NDUFA9Q16795 377 aa17.04■□□□□ 0.32
COL9A3-205ENST00000466192 FRRS1Q6ZNA5 592 aa17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms