RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 CBSLP0DN79 551 aa11.03□□□□□ -0.64
CPSF3-202ENST00000460593 FGF9P31371 208 aaPredicted RBP11.03□□□□□ -0.64
CPSF3-202ENST00000460593 CBSP35520 551 aa11.03□□□□□ -0.64
CPSF3-202ENST00000460593 CTSOP43234 321 aaPredicted RBP11.03□□□□□ -0.64
CPSF3-202ENST00000460593 BTG1P62324 171 aa11.03□□□□□ -0.64
CPSF3-202ENST00000460593 CRHR2Q13324 411 aa11.03□□□□□ -0.64
CPSF3-202ENST00000460593 SLBPQ14493 270 aaKnown RBP eCLIP11.03□□□□□ -0.64
CPSF3-202ENST00000460593 GRIN2CQ14957 1233 aa11.03□□□□□ -0.64
CPSF3-202ENST00000460593 SLC36A2Q495M3 483 aa11.03□□□□□ -0.64
CPSF3-202ENST00000460593 EOGTQ5NDL2 527 aa11.03□□□□□ -0.64
CPSF3-202ENST00000460593 ADGRF1Q5T601 910 aa11.03□□□□□ -0.64
CPSF3-202ENST00000460593 GRHL2Q6ISB3 625 aa11.03□□□□□ -0.64
CPSF3-202ENST00000460593 C17orf107Q6ZR85 190 aa11.03□□□□□ -0.64
CPSF3-202ENST00000460593 Q6ZTK2 550 aa11.03□□□□□ -0.64
CPSF3-202ENST00000460593 NLRC3Q7RTR2 1065 aa11.03□□□□□ -0.64
CPSF3-202ENST00000460593 RTN4RL1Q86UN2 441 aaPredicted RBP11.03□□□□□ -0.64
CPSF3-202ENST00000460593 OR4D9Q8NGE8 314 aa11.03□□□□□ -0.64
CPSF3-202ENST00000460593 CLP1Q92989 425 aaKnown RBP11.03□□□□□ -0.64
CPSF3-202ENST00000460593 SLC22A12Q96S37 553 aa11.03□□□□□ -0.64
CPSF3-202ENST00000460593 SMG9Q9H0W8 520 aaKnown RBP11.03□□□□□ -0.64
CPSF3-202ENST00000460593 BRD7Q9NPI1 651 aa11.03□□□□□ -0.64
CPSF3-202ENST00000460593 MIEF1Q9NQG6 463 aa11.03□□□□□ -0.64
CPSF3-202ENST00000460593 TAAR2Q9P1P5 351 aa11.03□□□□□ -0.64
CPSF3-202ENST00000460593 CHST2Q9Y4C5 530 aa11.03□□□□□ -0.64
CPSF3-202ENST00000460593 CSNK1G3Q9Y6M4 447 aa11.03□□□□□ -0.64
CPSF3-202ENST00000460593 hCG_1807616A0A1W2PRN6 198 aa11.02□□□□□ -0.64
CPSF3-202ENST00000460593 PRAMEF27A3QJZ7 478 aa11.02□□□□□ -0.64
CPSF3-202ENST00000460593 SOCS6O14544 535 aa11.02□□□□□ -0.64
CPSF3-202ENST00000460593 KHNYNO15037 678 aaKnown RBP11.02□□□□□ -0.64
CPSF3-202ENST00000460593 SLC28A2O43868 658 aa11.02□□□□□ -0.64
CPSF3-202ENST00000460593 URODP06132 367 aa11.02□□□□□ -0.64
CPSF3-202ENST00000460593 ALPPL2P10696 532 aa11.02□□□□□ -0.64
CPSF3-202ENST00000460593 BMP8BP34820 402 aa11.02□□□□□ -0.64
CPSF3-202ENST00000460593 NUP62P37198 522 aaPredicted RBP11.02□□□□□ -0.64
CPSF3-202ENST00000460593 GBX2P52951 348 aaPredicted RBP11.02□□□□□ -0.64
CPSF3-202ENST00000460593 CDH11P55287 796 aa11.02□□□□□ -0.64
CPSF3-202ENST00000460593 STXBP1P61764 594 aaKnown RBP11.02□□□□□ -0.64
CPSF3-202ENST00000460593 MELKQ14680 651 aa11.02□□□□□ -0.64
CPSF3-202ENST00000460593 BMP8AQ7Z5Y6 402 aa11.02□□□□□ -0.64
CPSF3-202ENST00000460593 SDR16C5Q8N3Y7 309 aa11.02□□□□□ -0.64
CPSF3-202ENST00000460593 XAGE5Q8WWM1 108 aa11.02□□□□□ -0.64
CPSF3-202ENST00000460593 FCRL4Q96PJ5 515 aa11.02□□□□□ -0.64
CPSF3-202ENST00000460593 SYT17Q9BSW7 474 aa11.02□□□□□ -0.64
CPSF3-202ENST00000460593 C2orf49Q9BVC5 232 aaPredicted RBP11.02□□□□□ -0.64
CPSF3-202ENST00000460593 FNDC11Q9BVV2 318 aa11.02□□□□□ -0.64
CPSF3-202ENST00000460593 REG4Q9BYZ8 158 aa11.02□□□□□ -0.64
CPSF3-202ENST00000460593 DPAGT1Q9H3H5 408 aa11.02□□□□□ -0.64
CPSF3-202ENST00000460593 SAV1Q9H4B6 383 aaPredicted RBP11.02□□□□□ -0.64
CPSF3-202ENST00000460593 MAB21L2Q9Y586 359 aa11.02□□□□□ -0.64
CPSF3-202ENST00000460593 PLXNA3P51805 1871 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 A0A0G2JN53 185 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 SLC22A23A1A5C7 686 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 PRR23AA6NEV1 266 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 CHURC1-FNTBB4DL54 471 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 HYAL3O43820 417 aaPredicted RBP11.02□□□□□ -0.65
CPSF3-202ENST00000460593 IMPA1P29218 277 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 ZNF273Q14593 569 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 POM121L1PQ3SYA9 428 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 GPR33Q49SQ1 333 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 CCNJQ5T5M9 372 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 LRFN4Q6PJG9 635 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 CD200R1LQ6Q8B3 271 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 RASSF6Q6ZTQ3 369 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 GET4Q7L5D6 327 aaPredicted RBP11.02□□□□□ -0.65
CPSF3-202ENST00000460593 CAMKMTQ7Z624 323 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 TMEM173Q86WV6 379 aaPredicted RBP11.02□□□□□ -0.65
CPSF3-202ENST00000460593 PLA2G15Q8NCC3 412 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 OR6T1Q8NGN1 323 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 OR13C5Q8NGS8 318 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 SFXN2Q96NB2 322 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 DMRTA2Q96SC8 542 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 MED20Q9H944 212 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 MAN2C1Q9NTJ4 1040 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 FBXL2Q9UKC9 423 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 NTNG1Q9Y2I2 539 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 DOCK6Q96HP0 2047 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 TMEM129A0AVI4 362 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 H0YIV9 168 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 PRODHO43272 600 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 HLA-DPB1P04440 258 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 WNT1P04628 370 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 LPLP06858 475 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 ZDHHC11BP0C7U3 371 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 ATP1B2P14415 290 aaPredicted RBP11.02□□□□□ -0.65
CPSF3-202ENST00000460593 SPIN4Q56A73 249 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 METAP1DQ6UB28 335 aaPredicted RBP11.02□□□□□ -0.65
CPSF3-202ENST00000460593 GLB1LQ6UWU2 654 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 TOMM5Q8N4H5 51 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 ZNF485Q8NCK3 441 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 OR51G2Q8NGK0 314 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 GOT1L1Q8NHS2 421 aaPredicted RBP11.02□□□□□ -0.65
CPSF3-202ENST00000460593 SLC16A10Q8TF71 515 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 FGF11Q92914 225 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 ARMC5Q96C12 935 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 FAM46AQ96IP4 442 aaKnown RBP11.02□□□□□ -0.65
CPSF3-202ENST00000460593 ZSWIM3Q96MP5 696 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 SERHL2Q9H4I8 314 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 C11orf49Q9H6J7 331 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 AUNIPQ9H7T9 357 aa11.02□□□□□ -0.65
CPSF3-202ENST00000460593 NT5DC2Q9H857 520 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms