RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 DDX5P17844 614 aaKnown RBP21.04■□□□□ 0.96
PTPN4-208ENST00000460289 ACVR2AP27037 513 aa21.04■□□□□ 0.96
PTPN4-208ENST00000460289 MC3RP41968 323 aa21.04■□□□□ 0.96
PTPN4-208ENST00000460289 EFR3AQ14156 821 aa21.04■□□□□ 0.96
PTPN4-208ENST00000460289 FNDC7Q5VTL7 733 aa21.04■□□□□ 0.96
PTPN4-208ENST00000460289 TIGD3Q6B0B8 471 aa21.04■□□□□ 0.96
PTPN4-208ENST00000460289 SLC44A2Q8IWA5 706 aaPredicted RBP21.04■□□□□ 0.96
PTPN4-208ENST00000460289 OR2L13Q8N349 312 aa21.04■□□□□ 0.96
PTPN4-208ENST00000460289 OR1J4Q8NGS1 313 aa21.04■□□□□ 0.96
PTPN4-208ENST00000460289 CA5BP1Q8WTZ4 195 aa21.04■□□□□ 0.96
PTPN4-208ENST00000460289 RND1Q92730 232 aa21.04■□□□□ 0.96
PTPN4-208ENST00000460289 MTERF3Q96E29 417 aa21.04■□□□□ 0.96
PTPN4-208ENST00000460289 ELP4Q96EB1 424 aa21.04■□□□□ 0.96
PTPN4-208ENST00000460289 PGM2Q96G03 612 aa21.04■□□□□ 0.96
PTPN4-208ENST00000460289 SH3BP4Q9P0V3 963 aa21.04■□□□□ 0.96
PTPN4-208ENST00000460289 BAIAP2L1Q9UHR4 511 aa21.04■□□□□ 0.96
PTPN4-208ENST00000460289 C15orf41Q9Y2V0 281 aa21.04■□□□□ 0.96
PTPN4-208ENST00000460289 OR10H1Q9Y4A9 318 aa21.04■□□□□ 0.96
PTPN4-208ENST00000460289 PCDHGB3Q9Y5G1 929 aa21.04■□□□□ 0.96
PTPN4-208ENST00000460289 NCOA6Q14686 2063 aaPredicted RBP21.03■□□□□ 0.96
PTPN4-208ENST00000460289 NBPF19A0A087WUL8 3843 aa21.03■□□□□ 0.96
PTPN4-208ENST00000460289 UPK1AO00322 258 aa21.03■□□□□ 0.96
PTPN4-208ENST00000460289 PDPK1O15530 556 aa21.03■□□□□ 0.96
PTPN4-208ENST00000460289 AKAP10O43572 662 aa21.03■□□□□ 0.96
PTPN4-208ENST00000460289 WDR1O75083 606 aa21.03■□□□□ 0.96
PTPN4-208ENST00000460289 ICOSLGO75144 302 aa21.03■□□□□ 0.96
PTPN4-208ENST00000460289 ERLIN1O75477 346 aa21.03■□□□□ 0.96
PTPN4-208ENST00000460289 HSPA4LO95757 839 aa21.03■□□□□ 0.96
PTPN4-208ENST00000460289 HPNP05981 417 aa21.03■□□□□ 0.96
PTPN4-208ENST00000460289 HOXD4P09016 255 aaPredicted RBP21.03■□□□□ 0.96
PTPN4-208ENST00000460289 BCKDHAP12694 445 aa21.03■□□□□ 0.96
PTPN4-208ENST00000460289 IL12BP29460 328 aa21.03■□□□□ 0.96
PTPN4-208ENST00000460289 ARRB2P32121 409 aa21.03■□□□□ 0.96
PTPN4-208ENST00000460289 PNLIPRP2P54317 469 aa21.03■□□□□ 0.96
PTPN4-208ENST00000460289 MRPS22P82650 360 aaKnown RBP21.03■□□□□ 0.96
PTPN4-208ENST00000460289 ZNF155Q12901 538 aaPredicted RBP21.03■□□□□ 0.96
PTPN4-208ENST00000460289 ATP6AP1LQ52LC2 224 aa21.03■□□□□ 0.96
PTPN4-208ENST00000460289 XKR7Q5GH72 579 aa21.03■□□□□ 0.96
PTPN4-208ENST00000460289 TNFAIP8L3Q5GJ75 292 aa21.03■□□□□ 0.96
PTPN4-208ENST00000460289 DESI1Q6ICB0 168 aa21.03■□□□□ 0.96
PTPN4-208ENST00000460289 LRIG3Q6UXM1 1119 aa21.03■□□□□ 0.96
PTPN4-208ENST00000460289 R3HCC1LQ7Z5L2 792 aaKnown RBP21.03■□□□□ 0.96
PTPN4-208ENST00000460289 MARVELD2Q8N4S9 558 aa21.03■□□□□ 0.96
PTPN4-208ENST00000460289 ZFP28Q8NHY6 868 aa21.03■□□□□ 0.96
PTPN4-208ENST00000460289 ASB5Q8WWX0 329 aa21.03■□□□□ 0.96
PTPN4-208ENST00000460289 SDCCAG3Q96C92 435 aa21.03■□□□□ 0.96
PTPN4-208ENST00000460289 ADOQ96SZ5 270 aa21.03■□□□□ 0.96
PTPN4-208ENST00000460289 OSBPL11Q9BXB4 747 aa21.03■□□□□ 0.96
PTPN4-208ENST00000460289 UBQLN3Q9H347 655 aa21.03■□□□□ 0.96
PTPN4-208ENST00000460289 KCNK9Q9NPC2 374 aa21.03■□□□□ 0.96
PTPN4-208ENST00000460289 TNFRSF10DQ9UBN6 386 aa21.03■□□□□ 0.96
PTPN4-208ENST00000460289 CENPEQ02224 2701 aa21.02■□□□□ 0.96
PTPN4-208ENST00000460289 WDR91A4D1P6 747 aa21.02■□□□□ 0.96
PTPN4-208ENST00000460289 GNB5O14775 395 aa21.02■□□□□ 0.96
PTPN4-208ENST00000460289 TSPAN2O60636 221 aa21.02■□□□□ 0.96
PTPN4-208ENST00000460289 PEX11AO75192 247 aa21.02■□□□□ 0.96
PTPN4-208ENST00000460289 NME6O75414 186 aaPredicted RBP21.02■□□□□ 0.96
PTPN4-208ENST00000460289 SNUPNO95149 360 aaKnown RBP21.02■□□□□ 0.96
PTPN4-208ENST00000460289 ZWINTO95229 277 aa21.02■□□□□ 0.96
PTPN4-208ENST00000460289 GABRA1P14867 456 aa21.02■□□□□ 0.96
PTPN4-208ENST00000460289 GRNP28799 593 aaKnown RBP21.02■□□□□ 0.96
PTPN4-208ENST00000460289 GPC1P35052 558 aa21.02■□□□□ 0.96
PTPN4-208ENST00000460289 TRPC1P48995 793 aa21.02■□□□□ 0.96
PTPN4-208ENST00000460289 CDK9P50750 372 aaKnown RBP21.02■□□□□ 0.96
PTPN4-208ENST00000460289 PSG6Q00889 435 aa21.02■□□□□ 0.96
PTPN4-208ENST00000460289 PMPCAQ10713 525 aa21.02■□□□□ 0.96
PTPN4-208ENST00000460289 ZNHIT3Q15649 155 aaPredicted RBP21.02■□□□□ 0.96
PTPN4-208ENST00000460289 CYP27C1Q4G0S4 372 aa21.02■□□□□ 0.96
PTPN4-208ENST00000460289 ANGPTL8Q6UXH0 198 aa21.02■□□□□ 0.96
PTPN4-208ENST00000460289 NPSR1Q6W5P4 371 aa21.02■□□□□ 0.96
PTPN4-208ENST00000460289 LARP4Q71RC2 724 aaKnown RBP eCLIP21.02■□□□□ 0.96
PTPN4-208ENST00000460289 ZBED6CLQ96FA7 236 aaPredicted RBP21.02■□□□□ 0.96
PTPN4-208ENST00000460289 PKNOX2Q96KN3 472 aa21.02■□□□□ 0.96
PTPN4-208ENST00000460289 SLC6A15Q9H2J7 730 aa21.02■□□□□ 0.96
PTPN4-208ENST00000460289 SPRR3Q9UBC9 169 aa21.02■□□□□ 0.96
PTPN4-208ENST00000460289 PRAMEF25A6NGN4 478 aa21.01■□□□□ 0.95
PTPN4-208ENST00000460289 SERPINE1P05121 402 aa21.01■□□□□ 0.95
PTPN4-208ENST00000460289 ENDOUP21128 410 aaKnown RBP21.01■□□□□ 0.95
PTPN4-208ENST00000460289 PTPN6P29350 595 aa21.01■□□□□ 0.95
PTPN4-208ENST00000460289 RPL3P39023 403 aaKnown RBP21.01■□□□□ 0.95
PTPN4-208ENST00000460289 PTGDSP41222 190 aa21.01■□□□□ 0.95
PTPN4-208ENST00000460289 MANFP55145 182 aaKnown RBP21.01■□□□□ 0.95
PTPN4-208ENST00000460289 PDE7AQ13946 482 aa21.01■□□□□ 0.95
PTPN4-208ENST00000460289 TOMM20Q15388 145 aa21.01■□□□□ 0.95
PTPN4-208ENST00000460289 CHI3L2Q15782 390 aa21.01■□□□□ 0.95
PTPN4-208ENST00000460289 ANKRD26P1Q6NSI1 321 aa21.01■□□□□ 0.95
PTPN4-208ENST00000460289 B3GNT6Q6ZMB0 384 aa21.01■□□□□ 0.95
PTPN4-208ENST00000460289 ZNF551Q7Z340 670 aaPredicted RBP21.01■□□□□ 0.95
PTPN4-208ENST00000460289 CLHC1Q8NHS4 586 aa21.01■□□□□ 0.95
PTPN4-208ENST00000460289 GALNT9Q9HCQ5 603 aa21.01■□□□□ 0.95
PTPN4-208ENST00000460289 ACSS1Q9NUB1 689 aaPredicted RBP21.01■□□□□ 0.95
PTPN4-208ENST00000460289 ALKBH4Q9NXW9 302 aa21.01■□□□□ 0.95
PTPN4-208ENST00000460289 MRTO4Q9UKD2 239 aaKnown RBP21.01■□□□□ 0.95
PTPN4-208ENST00000460289 C15orf38-AP3S2A0A0A6YYH1 394 aa21■□□□□ 0.95
PTPN4-208ENST00000460289 TTC36A6NLP5 189 aa21■□□□□ 0.95
PTPN4-208ENST00000460289 SNPHO15079 494 aa21■□□□□ 0.95
PTPN4-208ENST00000460289 SKAP2O75563 359 aaPredicted RBP21■□□□□ 0.95
PTPN4-208ENST00000460289 CBR3O75828 277 aa21■□□□□ 0.95
PTPN4-208ENST00000460289 PSMG1O95456 288 aa21■□□□□ 0.95
PTPN4-208ENST00000460289 DHRS4L1P0CG22 281 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms