RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 RBM18Q96H35 190 aaKnown RBP3.69□□□□□ -1.82
VPS29-202ENST00000447578 C12orf42Q96LP6 360 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 FMO2Q99518 471 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 EPYCQ99645 322 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 COQ7Q99807 217 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 ERP44Q9BS26 406 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 RHNO1Q9BSD3 238 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 TEX13BQ9BXU2 312 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 FAM49AQ9H0Q0 323 aaPredicted RBP3.69□□□□□ -1.82
VPS29-202ENST00000447578 DPEP2Q9H4A9 486 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 XPNPEP1Q9NQW7 623 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 ZNF302Q9NR11 478 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 HOMER3Q9NSC5 361 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 CNOT2Q9NZN8 540 aaKnown RBP3.69□□□□□ -1.82
VPS29-202ENST00000447578 MTRF1LQ9UGC7 380 aaKnown RBP3.69□□□□□ -1.82
VPS29-202ENST00000447578 PLA2G4CQ9UP65 541 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 COQ4Q9Y3A0 265 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 ADGRA3Q8IWK6 1321 aa3.69□□□□□ -1.82
VPS29-202ENST00000447578 RGPD3A6NKT7 1758 aaPredicted RBP3.68□□□□□ -1.82
VPS29-202ENST00000447578 RGPD4Q7Z3J3 1758 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 CCDC162PA2VCL2 907 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 LRRIQ4A6NIV6 560 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 SMIM23A6NLE4 172 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 K7ERI5 159 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 NME2P1O60361 137 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 CLN5O75503 358 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 AK1P00568 194 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 HLA-DRAP01903 254 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 SHBGP04278 402 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 YES1P07947 543 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 SFTPBP07988 381 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 GSTA2P09210 222 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 CETPP11597 493 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 FGF5P12034 268 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 CD59P13987 128 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 CA6P23280 308 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 MARK3P27448 753 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 TMOD1P28289 359 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 AKT2P31751 481 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 ARL2P36404 184 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 COILP38432 576 aaPredicted RBP3.68□□□□□ -1.82
VPS29-202ENST00000447578 SSR1P43307 286 aaKnown RBP3.68□□□□□ -1.82
VPS29-202ENST00000447578 NAMPTP43490 491 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 HOXA1P49639 335 aaPredicted RBP3.68□□□□□ -1.82
VPS29-202ENST00000447578 DVL1P1P54792 670 aaPredicted RBP3.68□□□□□ -1.82
VPS29-202ENST00000447578 PLTPP55058 493 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 KCNK10P57789 538 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 NLRP11P59045 1033 aaKnown RBP3.68□□□□□ -1.82
VPS29-202ENST00000447578 MAGOHP61326 146 aaKnown RBP3.68□□□□□ -1.82
VPS29-202ENST00000447578 HERV-K104P61576 105 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 CNTN2Q02246 1040 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 ENPEPQ07075 957 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 SNX1Q13596 522 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 CUL2Q13617 745 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 SQLEQ14534 574 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 PPP1R7Q15435 360 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 C2CD6Q53TS8 623 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 LIN9Q5TKA1 542 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 LCN1P1Q5VSP4 162 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 DUPD1Q68J44 220 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 SPOPLQ6IQ16 392 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 CCDC137Q6PK04 289 aaKnown RBP3.68□□□□□ -1.82
VPS29-202ENST00000447578 AFTPHQ6ULP2 937 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 TMEM26Q6ZUK4 368 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 SLC16A9Q7RTY1 509 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 COX8CQ7Z4L0 72 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 CPEB2Q7Z5Q1 589 aaKnown RBP3.68□□□□□ -1.82
VPS29-202ENST00000447578 EFCAB13Q8IY85 973 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 TMEM99Q8N816 258 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 RNF149Q8NC42 400 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 SPATA18Q8TC71 538 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 C1orf54Q8WWF1 131 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 PIK3R3Q92569 461 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 N4BP2L2Q92802 583 aaPredicted RBP3.68□□□□□ -1.82
VPS29-202ENST00000447578 CD101Q93033 1021 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 NXPE2Q96DL1 559 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 SLC47A1Q96FL8 570 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 C16orf58Q96GQ5 468 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 SELENOSQ9BQE4 189 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 PSD2Q9BQI7 771 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 FAM107BQ9H098 131 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 PORCNQ9H237 461 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 MTIF3Q9H2K0 278 aaKnown RBP3.68□□□□□ -1.82
VPS29-202ENST00000447578 AZI2Q9H6S1 392 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 DCLRE1BQ9H816 532 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 MARCH7Q9H992 704 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 EBF2Q9HAK2 575 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 NRBP2Q9NSY0 501 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 FAM212BQ9NTI7 297 aaPredicted RBP3.68□□□□□ -1.82
VPS29-202ENST00000447578 ZDHHC18Q9NUE0 388 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 HOXC10Q9NYD6 342 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 RBAKQ9NYW8 714 aaPredicted RBP3.68□□□□□ -1.82
VPS29-202ENST00000447578 UVRAGQ9P2Y5 699 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 COPS7AQ9UBW8 275 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 C19orf25Q9UFG5 118 aaPredicted RBP3.68□□□□□ -1.82
VPS29-202ENST00000447578 IL36AQ9UHA7 158 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 PCYOX1Q9UHG3 505 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 TEKT2Q9UIF3 430 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 ANAPC7Q9UJX3 599 aa3.68□□□□□ -1.82
VPS29-202ENST00000447578 FAF1Q9UNN5 650 aaPredicted RBP3.68□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms