RNA–Protein interactions for RNA: ENST00000447124.1

SDC1-205, Transcript of syndecan 1, humanhuman

TSL 4

Gene SDC1, Length 591 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-205ENST00000447124 ERN1O75460 977 aaKnown RBP18.9■□□□□ 0.62
SDC1-205ENST00000447124 KRT4P19013 534 aa18.9■□□□□ 0.62
SDC1-205ENST00000447124 MPIP34949 423 aa18.9■□□□□ 0.62
SDC1-205ENST00000447124 GSTM5P46439 218 aa18.9■□□□□ 0.62
SDC1-205ENST00000447124 NAA20P61599 178 aa18.9■□□□□ 0.62
SDC1-205ENST00000447124 ZNF763Q0D2J5 394 aa18.9■□□□□ 0.62
SDC1-205ENST00000447124 SNTB1Q13884 538 aaKnown RBP18.9■□□□□ 0.62
SDC1-205ENST00000447124 CFAP157Q5JU67 520 aa18.9■□□□□ 0.62
SDC1-205ENST00000447124 NOXRED1Q6NXP6 359 aa18.9■□□□□ 0.62
SDC1-205ENST00000447124 WDR53Q7Z5U6 358 aaPredicted RBP18.9■□□□□ 0.62
SDC1-205ENST00000447124 C10orf107Q8IVU9 208 aa18.9■□□□□ 0.62
SDC1-205ENST00000447124 FAM9CQ8IZT9 166 aa18.9■□□□□ 0.62
SDC1-205ENST00000447124 RELL2Q8NC24 303 aaPredicted RBP18.9■□□□□ 0.62
SDC1-205ENST00000447124 CDC26Q8NHZ8 85 aa18.9■□□□□ 0.62
SDC1-205ENST00000447124 RNF138Q8WVD3 245 aa18.9■□□□□ 0.62
SDC1-205ENST00000447124 EGLN2Q96KS0 407 aa18.9■□□□□ 0.62
SDC1-205ENST00000447124 GATA5Q9BWX5 397 aaPredicted RBP18.9■□□□□ 0.62
SDC1-205ENST00000447124 ANKZF1Q9H8Y5 726 aa18.9■□□□□ 0.62
SDC1-205ENST00000447124 PPCSQ9HAB8 311 aa18.9■□□□□ 0.62
SDC1-205ENST00000447124 KLRF1Q9NZS2 232 aa18.9■□□□□ 0.62
SDC1-205ENST00000447124 CAMK2AQ9UQM7 478 aa18.9■□□□□ 0.62
SDC1-205ENST00000447124 PTGDR2Q9Y5Y4 395 aa18.9■□□□□ 0.62
SDC1-205ENST00000447124 F8P00451 2351 aa18.9■□□□□ 0.62
SDC1-205ENST00000447124 HSPB2A8KAH6 182 aa18.89■□□□□ 0.61
SDC1-205ENST00000447124 FAM47E-STBD1D6RA91 191 aa18.89■□□□□ 0.61
SDC1-205ENST00000447124 H3BQF6 201 aa18.89■□□□□ 0.61
SDC1-205ENST00000447124 CBR3O75828 277 aa18.89■□□□□ 0.61
SDC1-205ENST00000447124 RSL1D1O76021 490 aaKnown RBP18.89■□□□□ 0.61
SDC1-205ENST00000447124 JUNP05412 331 aaKnown RBP18.89■□□□□ 0.61
SDC1-205ENST00000447124 TACR1P25103 407 aa18.89■□□□□ 0.61
SDC1-205ENST00000447124 TIMP3P35625 211 aa18.89■□□□□ 0.61
SDC1-205ENST00000447124 HSPB2Q16082 182 aa18.89■□□□□ 0.61
SDC1-205ENST00000447124 IMPG1Q17R60 797 aa18.89■□□□□ 0.61
SDC1-205ENST00000447124 ERCC6LQ2NKX8 1250 aa18.89■□□□□ 0.61
SDC1-205ENST00000447124 NSUN5P2Q63ZY6 315 aa18.89■□□□□ 0.61
SDC1-205ENST00000447124 CLEC6AQ6EIG7 209 aa18.89■□□□□ 0.61
SDC1-205ENST00000447124 Q6ZSR9 355 aa18.89■□□□□ 0.61
SDC1-205ENST00000447124 SLC44A2Q8IWA5 706 aaPredicted RBP18.89■□□□□ 0.61
SDC1-205ENST00000447124 CLYBLQ8N0X4 340 aa18.89■□□□□ 0.61
SDC1-205ENST00000447124 CCDC63Q8NA47 563 aa18.89■□□□□ 0.61
SDC1-205ENST00000447124 OR2W6PQ8NHA6 318 aa18.89■□□□□ 0.61
SDC1-205ENST00000447124 FAM76AQ8TAV0 307 aa18.89■□□□□ 0.61
SDC1-205ENST00000447124 RDH11Q8TC12 318 aa18.89■□□□□ 0.61
SDC1-205ENST00000447124 TMCO6Q96DC7 493 aa18.89■□□□□ 0.61
SDC1-205ENST00000447124 GLIPR2Q9H4G4 154 aa18.89■□□□□ 0.61
SDC1-205ENST00000447124 MYNNQ9NPC7 610 aa18.89■□□□□ 0.61
SDC1-205ENST00000447124 RRAGDQ9NQL2 400 aaPredicted RBP18.89■□□□□ 0.61
SDC1-205ENST00000447124 KCNN3Q9UGI6 736 aa18.89■□□□□ 0.61
SDC1-205ENST00000447124 L3MBTL1Q9Y468 752 aa18.89■□□□□ 0.61
SDC1-205ENST00000447124 AKAP6Q13023 2319 aa18.88■□□□□ 0.61
SDC1-205ENST00000447124 C17orf51A8MQB3 221 aa18.88■□□□□ 0.61
SDC1-205ENST00000447124 SYT5O00445 386 aa18.88■□□□□ 0.61
SDC1-205ENST00000447124 CRCPO75575 148 aa18.88■□□□□ 0.61
SDC1-205ENST00000447124 UROSP10746 265 aa18.88■□□□□ 0.61
SDC1-205ENST00000447124 NCBP2P52298 156 aaKnown RBP eCLIP18.88■□□□□ 0.61
SDC1-205ENST00000447124 ZNF136P52737 540 aa18.88■□□□□ 0.61
SDC1-205ENST00000447124 GAS1P54826 345 aa18.88■□□□□ 0.61
SDC1-205ENST00000447124 PSG6Q00889 435 aa18.88■□□□□ 0.61
SDC1-205ENST00000447124 LIPMQ5VYY2 423 aa18.88■□□□□ 0.61
SDC1-205ENST00000447124 OR5M10Q6IEU7 315 aa18.88■□□□□ 0.61
SDC1-205ENST00000447124 LARP4Q71RC2 724 aaKnown RBP eCLIP18.88■□□□□ 0.614e-7■□□□□ 8.8
SDC1-205ENST00000447124 PLCZ1Q86YW0 608 aa18.88■□□□□ 0.61
SDC1-205ENST00000447124 LACC1Q8IV20 430 aa18.88■□□□□ 0.61
SDC1-205ENST00000447124 PM20D2Q8IYS1 436 aa18.88■□□□□ 0.61
SDC1-205ENST00000447124 ZNF559Q9BR84 538 aa18.88■□□□□ 0.61
SDC1-205ENST00000447124 OR2B2Q9GZK3 357 aa18.88■□□□□ 0.61
SDC1-205ENST00000447124 STMN4Q9H169 189 aaPredicted RBP18.88■□□□□ 0.61
SDC1-205ENST00000447124 TUBB1Q9H4B7 451 aa18.88■□□□□ 0.61
SDC1-205ENST00000447124 FBXL2Q9UKC9 423 aa18.88■□□□□ 0.61
SDC1-205ENST00000447124 C19orf53Q9UNZ5 99 aaPredicted RBP18.88■□□□□ 0.61
SDC1-205ENST00000447124 WBP11Q9Y2W2 641 aaKnown RBP18.88■□□□□ 0.61
SDC1-205ENST00000447124 MPDZO75970 2070 aa18.88■□□□□ 0.61
SDC1-205ENST00000447124 A0A087WV62 115 aa18.87■□□□□ 0.61
SDC1-205ENST00000447124 TLDC2A0PJX2 215 aa18.87■□□□□ 0.61
SDC1-205ENST00000447124 NPIPB8E9PQR5 432 aa18.87■□□□□ 0.61
SDC1-205ENST00000447124 UPK1AO00322 258 aa18.87■□□□□ 0.61
SDC1-205ENST00000447124 PLOD2O00469 737 aa18.87■□□□□ 0.61
SDC1-205ENST00000447124 ABCB7O75027 752 aa18.87■□□□□ 0.61
SDC1-205ENST00000447124 PRPH2P23942 346 aa18.87■□□□□ 0.61
SDC1-205ENST00000447124 MC3RP41968 323 aa18.87■□□□□ 0.61
SDC1-205ENST00000447124 STARP49675 285 aa18.87■□□□□ 0.61
SDC1-205ENST00000447124 PNLIPRP2P54317 469 aa18.87■□□□□ 0.61
SDC1-205ENST00000447124 PCLAFQ15004 111 aa18.87■□□□□ 0.61
SDC1-205ENST00000447124 ARSKQ6UWY0 536 aa18.87■□□□□ 0.61
SDC1-205ENST00000447124 TMEM107Q6UX40 140 aa18.87■□□□□ 0.61
SDC1-205ENST00000447124 TRIM42Q8IWZ5 723 aa18.87■□□□□ 0.61
SDC1-205ENST00000447124 OR2T11Q8NH01 316 aa18.87■□□□□ 0.61
SDC1-205ENST00000447124 EFHD2Q96C19 240 aaPredicted RBP18.87■□□□□ 0.61
SDC1-205ENST00000447124 AMDHD1Q96NU7 426 aa18.87■□□□□ 0.61
SDC1-205ENST00000447124 TRIB1Q96RU8 372 aa18.87■□□□□ 0.61
SDC1-205ENST00000447124 TAS2R9Q9NYW1 312 aa18.87■□□□□ 0.61
SDC1-205ENST00000447124 HIVEP1P15822 2718 aa18.86■□□□□ 0.61
SDC1-205ENST00000447124 CD8B2A6NJW9 211 aa18.86■□□□□ 0.61
SDC1-205ENST00000447124 ZIC3O60481 467 aa18.86■□□□□ 0.61
SDC1-205ENST00000447124 SEC22BO75396 215 aa18.86■□□□□ 0.61
SDC1-205ENST00000447124 PSMG1O95456 288 aa18.86■□□□□ 0.61
SDC1-205ENST00000447124 ACTL6AO96019 429 aa18.86■□□□□ 0.61
SDC1-205ENST00000447124 IL2RAP01589 272 aa18.86■□□□□ 0.61
SDC1-205ENST00000447124 CPN1P15169 458 aa18.86■□□□□ 0.61
SDC1-205ENST00000447124 BMP5P22003 454 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms