RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 SNX18Q96RF0 628 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 SRRQ9GZT4 340 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 GLIPR2Q9H4G4 154 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 PRELID1Q9Y255 219 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 HCFC2Q9Y5Z7 792 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 ALG5Q9Y673 324 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 TOXO94900 526 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 IGHA2P01877 340 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 CLDN2P57739 230 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 PRSS53Q2L4Q9 553 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 CXXC5Q7LFL8 322 aaKnown RBP11.19□□□□□ -0.62
MSH6-204ENST00000445503 KLHDC8AQ8IYD2 350 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 AMER3Q8N944 861 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 FAM98AQ8NCA5 519 aaKnown RBP11.19□□□□□ -0.62
MSH6-204ENST00000445503 PLA2G15Q8NCC3 412 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 OR9A2Q8NGT5 310 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 BBS10Q8TAM1 723 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 BTBD2Q9BX70 525 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 NCKAP1Q9Y2A7 1128 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 WDR45Q9Y484 360 aa11.19□□□□□ -0.62
MSH6-204ENST00000445503 POLR1CO15160 346 aaPredicted RBP11.18□□□□□ -0.62
MSH6-204ENST00000445503 FCER2P06734 321 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 CERS1P27544 350 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 IRS1P35568 1242 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 RPL4P36578 427 aaKnown RBP11.18□□□□□ -0.62
MSH6-204ENST00000445503 CRYBB2P43320 205 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 SNRPGP62308 76 aaKnown RBP11.18□□□□□ -0.62
MSH6-204ENST00000445503 IFITM2Q01629 132 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 SUZ12Q15022 739 aaKnown RBP11.18□□□□□ -0.62
MSH6-204ENST00000445503 C6orf132Q5T0Z8 1188 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 PRICKLE2Q7Z3G6 844 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 CYB561A3Q8NBI2 242 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 OR14C36Q8NHC7 312 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 SUN3Q8TAQ9 357 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 PCNPQ8WW12 178 aaKnown RBP11.18□□□□□ -0.62
MSH6-204ENST00000445503 PCBD2Q9H0N5 130 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 KCNN2Q9H2S1 579 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 WDR26Q9H7D7 661 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 GALNT9Q9HCQ5 603 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 MRPL15Q9P015 296 aaKnown RBP11.18□□□□□ -0.62
MSH6-204ENST00000445503 GTF2A1LQ9UNN4 478 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 AP1M2Q9Y6Q5 423 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 ANKRD36A6QL64 1941 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 PCM1Q15154 2024 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 CHD5Q8TDI0 1954 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 SDHBP21912 280 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 STX4Q12846 297 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 CDH24Q86UP0 819 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 ATCAYQ86WG3 371 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 OR6C4Q8NGE1 309 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 SLC25A46Q96AG3 418 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 ARRDC3Q96B67 414 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 ZDHHC5Q9C0B5 715 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 COQ3Q9NZJ6 369 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 B4DXG7 233 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 GREM1O60565 184 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 ASGR2P07307 311 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 ALAS2P22557 587 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 ELOAQ14241 798 aaKnown RBP11.18□□□□□ -0.62
MSH6-204ENST00000445503 IRF3Q14653 427 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 P2RY14Q15391 338 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 CCNJQ5T5M9 372 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 PRPF38BQ5VTL8 546 aaKnown RBP11.18□□□□□ -0.62
MSH6-204ENST00000445503 ERN2Q76MJ5 926 aaKnown RBP11.18□□□□□ -0.62
MSH6-204ENST00000445503 OR4D11Q8NGI4 311 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 LCN9Q8WX39 176 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 OSTF1Q92882 214 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 ZSWIM3Q96MP5 696 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 WFDC6Q9BQY6 131 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 PLA2G12AQ9BZM1 189 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 PHPT1Q9NRX4 125 aaPredicted RBP11.18□□□□□ -0.62
MSH6-204ENST00000445503 DKK3Q9UBP4 350 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 SLC23A2Q9UGH3 650 aa11.18□□□□□ -0.62
MSH6-204ENST00000445503 TBC1D3DA0A087WVF3 549 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 TBC1D3IA0A087WXS9 549 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 TBC1D3EA0A087X179 549 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 TBC1D3KA0A087X1G2 549 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 NPIPA5A0A0B4J1W7 369 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 A0A1W2PRG6 482 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 TBC1D3FA6NER0 549 aaPredicted RBP11.17□□□□□ -0.62
MSH6-204ENST00000445503 TBC1D3LB9A6J9 549 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 NPIPA7E9PJI5 369 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 TBC1D3HP0C7X1 549 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 NPIPA8P0DM63 369 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 CTSAP10619 480 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 HOXB9P17482 250 aaPredicted RBP11.17□□□□□ -0.62
MSH6-204ENST00000445503 CENPAP49450 140 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 FABP5Q01469 135 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 PLK5Q496M5 336 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 C18orf63Q68DL7 685 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 TBC1D3GQ6DHY5 549 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 TBC1D3CQ6IPX1 549 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 LCTLQ6UWM7 567 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 CEACAM19Q7Z692 300 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 TECPR1Q7Z6L1 1165 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 NLRP8Q86W28 1048 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 LAS2Q8IYD9 372 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 TBC1D3Q8IZP1 549 aaPredicted RBP11.17□□□□□ -0.62
MSH6-204ENST00000445503 HDDC3Q8N4P3 179 aa11.17□□□□□ -0.62
MSH6-204ENST00000445503 OR51L1Q8NGJ5 315 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 78.5 ms