RNA–Protein interactions for RNA: ENST00000439468.1

VPS41-207, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5

Gene VPS41, Length 354 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-207ENST00000439468 MBD2Q9UBB5 411 aa2.75□□□□□ -1.97
VPS41-207ENST00000439468 MLXQ9UH92 298 aa2.75□□□□□ -1.97
VPS41-207ENST00000439468 ISY1Q9ULR0 285 aaKnown RBP2.75□□□□□ -1.97
VPS41-207ENST00000439468 RNF24Q9Y225 148 aa2.75□□□□□ -1.97
VPS41-207ENST00000439468 MROH2BQ7Z745 1585 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 POLA1P09884 1462 aaPredicted RBP2.74□□□□□ -1.97
VPS41-207ENST00000439468 ZSCAN5CA6NGD5 496 aaPredicted RBP2.74□□□□□ -1.97
VPS41-207ENST00000439468 FOXI3A8MTJ6 420 aaPredicted RBP2.74□□□□□ -1.97
VPS41-207ENST00000439468 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP2.74□□□□□ -1.97
VPS41-207ENST00000439468 LGALS8O00214 317 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 SMPD2O60906 423 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 ZNF253O75346 499 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 GSTA1P08263 222 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 WNT2P09544 360 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 PAICSP22234 425 aaKnown RBP2.74□□□□□ -1.97
VPS41-207ENST00000439468 IL10P22301 178 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 IDSP22304 550 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 PPP2R1BP30154 601 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 MAGEA4P43358 317 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 HTR5AP47898 357 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 IST1P53990 364 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 MFAP2P55001 183 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 MTTPP55157 894 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 NOP14P78316 857 aaKnown RBP2.74□□□□□ -1.97
VPS41-207ENST00000439468 ZNF85Q03923 595 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 SRYQ05066 204 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 CRMP1Q14194 572 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 TMEM52BQ4KMG9 183 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 DNAJC21Q5F1R6 531 aaKnown RBP2.74□□□□□ -1.97
VPS41-207ENST00000439468 LINC00242Q5T6M2 205 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 TAF3Q5VWG9 929 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 PRR5LQ6MZQ0 368 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 ZNF774Q6NX45 483 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 SLC39A4Q6P5W5 647 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 ABRAXAS1Q6UWZ7 409 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 GOLGA7Q7Z5G4 137 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 SYVN1Q86TM6 617 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 POM121L12Q8N7R1 296 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 FLVCR1-AS1Q8TAF5 88 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 NCLNQ969V3 563 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 DNAJA3Q96EY1 480 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 PIWIL1Q96J94 861 aaKnown RBP2.74□□□□□ -1.97
VPS41-207ENST00000439468 KCNK16Q96T55 309 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 NMNAT2Q9BZQ4 307 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 RWDD1Q9H446 243 aaPredicted RBP2.74□□□□□ -1.97
VPS41-207ENST00000439468 TSPY26PQ9H489 355 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 BCAP29Q9UHQ4 241 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 YEATS2Q9ULM3 1422 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 TTC37Q6PGP7 1564 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 PARD3Q8TEW0 1356 aa2.74□□□□□ -1.97
VPS41-207ENST00000439468 KIAA0586Q9BVV6 1533 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 CEP350Q5VT06 3117 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 COL5A2P05997 1499 aaPredicted RBP2.73□□□□□ -1.97
VPS41-207ENST00000439468 RAPGEF6Q8TEU7 1601 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 TRAV9-2A0A087WT02 112 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 A0A0U1RQV5 110 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 BCLAF3A2AJT9 711 aaKnown RBP2.73□□□□□ -1.97
VPS41-207ENST00000439468 RNF222A6NCQ9 220 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 TRABD2BA6NFA1 517 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 K7EPI3 171 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 E2F3O00716 465 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 SRPX2O60687 465 aaPredicted RBP2.73□□□□□ -1.97
VPS41-207ENST00000439468 SCGB2A1O75556 95 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 TOXO94900 526 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 DIRAS3O95661 229 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 MBD3O95983 291 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 IFNB1P01574 187 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 IGHV3-9P01782 118 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 HOXB7P09629 217 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 GSTT2P0CG29 244 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 GSTT2BP0CG30 244 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 GP9P14770 177 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 PTPN6P29350 595 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 ASMTP46597 345 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 BRCC3P46736 316 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 ARHGDIAP52565 204 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 HTD2P86397 168 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 SMC1AQ14683 1233 aaKnown RBP2.73□□□□□ -1.97
VPS41-207ENST00000439468 SHROOM1Q2M3G4 852 aaPredicted RBP2.73□□□□□ -1.97
VPS41-207ENST00000439468 PARP6Q2NL67 630 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 ACSF3Q4G176 576 aaPredicted RBP2.73□□□□□ -1.97
VPS41-207ENST00000439468 SLC22A6Q4U2R8 563 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 EIPR1Q53HC9 387 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 BEND6Q5SZJ8 279 aaPredicted RBP2.73□□□□□ -1.97
VPS41-207ENST00000439468 REP15Q6BDI9 236 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 Q7L0L9 218 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 CEACAM19Q7Z692 300 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 CDC20BQ86Y33 519 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 LRRC49Q8IUZ0 686 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 NAXDQ8IW45 347 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 SLC22A18ASQ8N1D0 253 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 BCORP1Q8N888 145 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 ZBTB44Q8NCP5 570 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 ANKRD20A12PQ8NF67 263 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 CRYGNQ8WXF5 182 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 C14orf79Q96F83 325 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 MCCC1Q96RQ3 725 aaPredicted RBP2.73□□□□□ -1.97
VPS41-207ENST00000439468 RANBP9Q96S59 729 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 FAM173AQ9BQD7 235 aa2.73□□□□□ -1.97
VPS41-207ENST00000439468 TAS2R3Q9NYW6 316 aa2.73□□□□□ -1.97
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms