RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 GTDC1Q4AE62 458 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 AGAP7PQ5VUJ5 663 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 RPS19BP1Q86WX3 136 aaKnown RBP9.37□□□□□ -0.91
CD44-207ENST00000425428 C10orf67Q8IYJ2 551 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 HORMAD2Q8N7B1 307 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 ZNF527Q8NB42 609 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 APCDD1LQ8NCL9 501 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 FBXO30Q8TB52 745 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 ELP5Q8TE02 316 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 THAP3Q8WTV1 239 aaPredicted RBP9.37□□□□□ -0.91
CD44-207ENST00000425428 ASB15Q8WXK1 588 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 POP5Q969H6 163 aaKnown RBP9.37□□□□□ -0.91
CD44-207ENST00000425428 REXO5Q96IC2 774 aaKnown RBP9.37□□□□□ -0.91
CD44-207ENST00000425428 LRGUKQ96M69 825 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 AGAP4Q96P64 663 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 BTBD9Q96Q07 612 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 WDR77Q9BQA1 342 aaPredicted RBP9.37□□□□□ -0.91
CD44-207ENST00000425428 GPATCH1Q9BRR8 931 aaKnown RBP9.37□□□□□ -0.91
CD44-207ENST00000425428 ITPAQ9BY32 194 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 HOXD1Q9GZZ0 328 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 ING2Q9H160 280 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 MUC13Q9H3R2 512 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 KAT8Q9H7Z6 458 aaKnown RBP9.37□□□□□ -0.91
CD44-207ENST00000425428 GPATCH2Q9NW75 528 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 SLC13A4Q9UKG4 626 aa9.37□□□□□ -0.91
CD44-207ENST00000425428 YARS2Q9Y2Z4 477 aaKnown RBP9.37□□□□□ -0.91
CD44-207ENST00000425428 TRBV5-3A0A0A0MS03 114 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 ELOVL7A1L3X0 281 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 FAM220BPB1ANY3 271 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 HRKO00198 91 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 TP53I11O14683 189 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 STX11O75558 287 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 REM1O75628 298 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 NKX2-2O95096 273 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 ETFAP13804 333 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 S1PR1P21453 382 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 PTPN6P29350 595 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 LCN1P31025 176 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 TRHRP34981 398 aaPredicted RBP9.36□□□□□ -0.91
CD44-207ENST00000425428 SSR4P51571 173 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 CASP9P55211 416 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 RPS26P62854 115 aaKnown RBP9.36□□□□□ -0.91
CD44-207ENST00000425428 BNIP2Q12982 314 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 SCARB2Q14108 478 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 EFR3AQ14156 821 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 EBPQ15125 230 aaKnown RBP9.36□□□□□ -0.91
CD44-207ENST00000425428 RABL3Q5HYI8 236 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 CRB2Q5IJ48 1285 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 REEP3Q6NUK4 255 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 SLC15A3Q8IY34 581 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 SLC34A3Q8N130 599 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 GALNT16Q8N428 558 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 HIPK4Q8NE63 616 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 SPPL2AQ8TCT8 520 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 APOBEC4Q8WW27 367 aaKnown RBP9.36□□□□□ -0.91
CD44-207ENST00000425428 RASSF5Q8WWW0 418 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 TM9SF4Q92544 642 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 PMM1Q92871 262 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 TMEM125Q96AQ2 219 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 TMCO6Q96DC7 493 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 DTNBP1Q96EV8 351 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 RMND5BQ96G75 393 aaPredicted RBP9.36□□□□□ -0.91
CD44-207ENST00000425428 C16orf58Q96GQ5 468 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 VSTM2LQ96N03 204 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 LRMDAQ9H2I8 198 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 PIF1Q9H611 641 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 TMEM38AQ9H6F2 299 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 EPS8L2Q9H6S3 715 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 ANKRA2Q9H9E1 313 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 POLE3Q9NRF9 147 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 TMEM181Q9P2C4 612 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 MYOTQ9UBF9 498 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 ZNF232Q9UNY5 417 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 ERVK-11Q9UQG0 969 aa9.36□□□□□ -0.91
CD44-207ENST00000425428 GPR55Q9Y2T6 319 aaPredicted RBP9.36□□□□□ -0.91
CD44-207ENST00000425428 GIMAP1-GIMAP5A0A087WTJ2 511 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 H3BNH8 94 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 WWP2O00308 870 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 PSMG1O95456 288 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 BCHEP06276 602 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 CD1EP15812 388 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 NAGAP17050 411 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 TCN1P20061 433 aaPredicted RBP9.35□□□□□ -0.91
CD44-207ENST00000425428 ENDOUP21128 410 aaKnown RBP9.35□□□□□ -0.91
CD44-207ENST00000425428 CCL11P51671 97 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 EFNA3P52797 238 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 CDK6Q00534 326 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 CHAF1BQ13112 559 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 ARHGAP11BQ3KRB8 267 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 PRAMEF8Q5VWM4 474 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 PRAMEF7Q5VXH5 474 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 PATL1Q86TB9 770 aaKnown RBP9.35□□□□□ -0.91
CD44-207ENST00000425428 PROSER1Q86XN7 944 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 C9orf40Q8IXQ3 194 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 GPALPP1Q8IXQ4 340 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 PEX5LQ8IYB4 626 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 FBXW8Q8N3Y1 598 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 SLC16A11Q8NCK7 471 aa9.35□□□□□ -0.91
CD44-207ENST00000425428 BHLHE22Q8NFJ8 381 aaPredicted RBP9.35□□□□□ -0.91
CD44-207ENST00000425428 OR5D16Q8NGK9 328 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms