RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 ZFAND4Q86XD8 727 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 CTAGE3PQ8IX95 158 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 CPNE9Q8IYJ1 553 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 LMNTD1Q8N9Z9 388 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 FLVCR1-AS1Q8TAF5 88 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 EEF1AKMT1Q8WVE0 214 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 KCNE4Q8WWG9 221 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 OIT3Q8WWZ8 545 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 ATL1Q8WXF7 558 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 NAF1Q96HR8 494 aaKnown RBP2.34□□□□□ -2.03
VPS13A-208ENST00000423463 ELMO2Q96JJ3 720 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 FRG2BQ96QU4 278 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 FMO2Q99518 471 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 PKP4Q99569 1192 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 NDNQ99608 321 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 RBBP8Q99708 897 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 H2AFJQ9BTM1 129 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 PARVBQ9HBI1 364 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 FGF21Q9NSA1 209 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 IRAK4Q9NWZ3 460 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 SPHK1Q9NYA1 384 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 NINJ2Q9NZG7 142 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 SNX7Q9UNH6 387 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 TMEM184BQ9Y519 407 aaPredicted RBP2.34□□□□□ -2.03
VPS13A-208ENST00000423463 KLK4Q9Y5K2 254 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 PSAT1Q9Y617 370 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 NFS1Q9Y697 457 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 UNC13CQ8NB66 2214 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 PLXNB3Q9ULL4 1909 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 NCOR2Q9Y618 2525 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 PABPN1LA6NDY0 278 aaKnown RBP2.34□□□□□ -2.03
VPS13A-208ENST00000423463 TSPAN4O14817 238 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 SRPX2O60687 465 aaPredicted RBP2.34□□□□□ -2.03
VPS13A-208ENST00000423463 CCNDBP1O95273 360 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 TSPAN12O95859 305 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 IFNA2P01563 188 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 F7P08709 466 aaPredicted RBP2.34□□□□□ -2.03
VPS13A-208ENST00000423463 HBQ1P09105 142 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 RHOXF2BP0C7M4 288 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 ERGP11308 486 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 FOLR1P15328 257 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 STMN1P16949 149 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 CRABP2P29373 138 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 CMPK1P30085 196 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 RPA3P35244 121 aaPredicted RBP2.34□□□□□ -2.03
VPS13A-208ENST00000423463 GGT5P36269 586 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 SLC26A3P40879 764 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 BDKRB1P46663 353 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 GABRA4P48169 554 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 SERPINB9P50453 376 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 CDH15P55291 814 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 AP1S2P56377 157 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 ATP6V0D1P61421 351 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 PPP1CAP62136 330 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 CDKL1Q00532 357 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 PRDX1Q06830 199 aaKnown RBP2.34□□□□□ -2.03
VPS13A-208ENST00000423463 KBTBD12Q3ZCT8 623 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 CCSMST1Q4G0I0 132 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 CDKL4Q5MAI5 379 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 Q5PR19 223 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 LGSNQ5TDP6 509 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 Q6ZSV7 163 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 PIWIL4Q7Z3Z4 852 aaKnown RBP2.34□□□□□ -2.03
VPS13A-208ENST00000423463 SAMD14Q8IZD0 417 aaPredicted RBP2.34□□□□□ -2.03
VPS13A-208ENST00000423463 DNAJC22Q8N4W6 341 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 LINC01555Q8NAE3 123 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 SETD9Q8NE22 299 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 OR2A1Q8NGT9 310 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 CNOT9Q92600 299 aaKnown RBP2.34□□□□□ -2.03
VPS13A-208ENST00000423463 ZNF501Q96CX3 271 aaPredicted RBP2.34□□□□□ -2.03
VPS13A-208ENST00000423463 LINGO1Q96FE5 620 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 URB1-AS1Q96HZ7 61 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 LRFN5Q96NI6 719 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 IL17FQ96PD4 163 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 OR6C1Q96RD1 312 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 GPR22Q99680 433 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 NRTNQ99748 197 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 OLFM1Q99784 485 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 RHOXF2Q9BQY4 288 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 PCBD2Q9H0N5 130 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 FANCEQ9HB96 536 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 SOHLH2Q9NX45 425 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 UTP6Q9NYH9 597 aaKnown RBP2.34□□□□□ -2.03
VPS13A-208ENST00000423463 ANKMY1Q9P2S6 941 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 CTNNAL1Q9UBT7 734 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 PLAGL1Q9UM63 463 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 PLCL2Q9UPR0 1127 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 DHDHQ9UQ10 334 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 PDE10AQ9Y233 779 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 CLDN16Q9Y5I7 305 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 AP1M2Q9Y6Q5 423 aa2.34□□□□□ -2.03
VPS13A-208ENST00000423463 PTPRBP23467 1997 aa2.34□□□□□ -2.04
VPS13A-208ENST00000423463 A0A087WUV0 522 aaPredicted RBP2.33□□□□□ -2.04
VPS13A-208ENST00000423463 A0A1W2PPV9 198 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 RPS10-NUDT3A0A1W2PQS6 291 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 TXNDC9O14530 226 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 RAD1O60671 282 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 STK17BO94768 372 aa2.33□□□□□ -2.04
VPS13A-208ENST00000423463 WISP3O95389 354 aaPredicted RBP2.33□□□□□ -2.04
VPS13A-208ENST00000423463 SLC16A8O95907 504 aa2.33□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 53.1 ms