RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 NDNFQ8TB73 568 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 LGALS12Q96DT0 336 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 RADILQ96JH8 1075 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 WASH6PQ9NQA3 447 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 CPNE7Q9UBL6 633 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 LYRM1O43325 122 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 ARSFP54793 590 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 ABHD18Q0P651 414 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 GPR50Q13585 617 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 EEF1DP3Q658K8 133 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 KDF1Q8NAX2 398 aaPredicted RBP12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 PDCD2LQ9BRP1 358 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 NICN1Q9BSH3 213 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 ACOT13Q9NPJ3 140 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 EXO1Q9UQ84 846 aaKnown RBP12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 CHD5Q8TDI0 1954 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 BTBD17A6NE02 478 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 MAKP20794 623 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 STT3AP46977 705 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 XYLT1Q86Y38 959 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 DOCK9Q9BZ29 2069 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 ROBO3Q96MS0 1386 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 PMM2O15305 246 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 PKLRP30613 574 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 TAS2R46P59540 309 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 OGDHQ02218 1023 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 TNK1Q13470 666 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 ADIPOR1Q96A54 375 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 REEP6Q96HR9 211 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 TAC3Q9UHF0 121 aa12.73□□□□□ -0.37
CCDC88A-204ENST00000413716 CCL22O00626 93 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 MSTNO14793 375 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 TXNDC12O95881 172 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 OR1E2P47887 323 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 TMEM200AQ86VY9 491 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 OR9A2Q8NGT5 310 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 OR8U1Q8NH10 309 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 PPP1R35Q8TAP8 253 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 ITPKCQ96DU7 683 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 UBL7Q96S82 380 aaPredicted RBP12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 SDCBP2Q9H190 292 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 OR6C2Q9NZP2 312 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 PRDX3P30048 256 aaKnown RBP12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 ZMAT1Q5H9K5 638 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 TICAM1Q8IUC6 712 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 ABHD11Q8NFV4 315 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 NENFQ9UMX5 172 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 NDRG2Q9UN36 371 aaKnown RBP12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 COL1A2P08123 1366 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 OAS1P00973 400 aaKnown RBP12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 SERPINA5P05154 406 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 F2RL1P55085 397 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 CAP1Q01518 475 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 OR10Q1Q8NGQ4 319 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 HMGB4Q8WW32 186 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 DOHHQ9BU89 302 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 CPED1A4D0V7 1026 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 A8MU76 341 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 DPEP1P16444 411 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 NFYAP23511 347 aaPredicted RBP12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 ADCYAP1R1P41586 468 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 HMGCS1Q01581 520 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 APOFQ13790 326 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 KIAA0930Q6ICG6 404 aaPredicted RBP12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 BRAT1Q6PJG6 821 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 OR4N5Q8IXE1 308 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 FAM185AQ8N0U4 392 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 ZUFSPQ96AP4 578 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 LMF1Q96S06 567 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 AIG1Q9NVV5 245 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 ZNF318Q5VUA4 2279 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 UPK1BO75841 260 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 ADAMTS19Q8TE59 1207 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 MIB2Q96AX9 1013 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 PURGQ9UJV8 347 aaKnown RBP12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 SLIT1O75093 1534 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 RFXAPO00287 272 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 NRLP54845 237 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 SPHARQ15513 63 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 TIGD5Q53EQ6 642 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 MS4A15Q8N5U1 240 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 SIGLECL1Q8N7X8 197 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 DNAJB11Q9UBS4 358 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 RIMS1Q86UR5 1692 aaKnown RBP12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 TISP43B9A030 160 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 CSTAP01040 98 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 OR10J4P0C629 311 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 RAB3AP20336 220 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 GSK3AP49840 483 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 AKR1C1Q04828 323 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 HIST2H3AQ71DI3 136 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 SETD7Q8WTS6 366 aaKnown RBP12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 SMAP2Q8WU79 429 aaPredicted RBP12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 KATNB1Q9BVA0 655 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 TNFSF9P41273 254 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 GCGRP47871 477 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 GBX1Q14549 363 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 SF3A2Q15428 464 aaKnown RBP12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 GPR33Q49SQ1 333 aa12.72□□□□□ -0.37
CCDC88A-204ENST00000413716 FAM74A1Q5RGS3 127 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms