RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 CATSPER2Q96P56 530 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 MAP3K3Q99759 626 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 C17orf62Q9BQA9 187 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 TUBB6Q9BUF5 446 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 NSMCE4AQ9NXX6 385 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 POMT2Q9UKY4 750 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 PRSS21Q9Y6M0 314 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 PIKFYVEQ9Y2I7 2098 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 KIF26BQ2KJY2 2108 aa5.96□□□□□ -1.46
USP40-202ENST00000409945 TMEM272A0A1B0GTI8 110 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 A0A1W2PNU3 283 aaPredicted RBP5.95□□□□□ -1.46
USP40-202ENST00000409945 PTGES3LE9PB15 166 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 K7ENP7 123 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 EBAG9O00559 213 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 CASC3O15234 703 aaKnown RBP5.95□□□□□ -1.46
USP40-202ENST00000409945 SLCO2B1O94956 709 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 SYF2O95926 243 aaKnown RBP5.95□□□□□ -1.46
USP40-202ENST00000409945 CBSLP0DN79 551 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 FGF5P12034 268 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 ENO3P13929 434 aaPredicted RBP5.95□□□□□ -1.46
USP40-202ENST00000409945 CYP2A7P20853 494 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 PRDX3P30048 256 aaKnown RBP5.95□□□□□ -1.46
USP40-202ENST00000409945 CCR7P32248 378 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 CA5AP35218 305 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 CBSP35520 551 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 HMGA2P52926 109 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 RPS15P62841 145 aaKnown RBP5.95□□□□□ -1.46
USP40-202ENST00000409945 CAV1Q03135 178 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 ABRQ12979 859 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 C10orf25Q5T742 122 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 RNASEH2BQ5TBB1 312 aaKnown RBP5.95□□□□□ -1.46
USP40-202ENST00000409945 ANKRD22Q5VYY1 191 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 LCTLQ6UWM7 567 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 CES3Q6UWW8 571 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 CENPUQ71F23 418 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 DPP10Q8N608 796 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 ZBTB2Q8N680 514 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 OR5AR1Q8NGP9 310 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 NAT14Q8WUY8 206 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 IFT81Q8WYA0 676 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 CDKL2Q92772 493 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 INPP5DQ92835 1189 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 SLC41A2Q96JW4 573 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 CTRCQ99895 268 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 SH3GL2Q99962 352 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 FAM129AQ9BZQ8 928 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 SPRTNQ9H040 489 aaPredicted RBP5.95□□□□□ -1.46
USP40-202ENST00000409945 PRORYQ9H606 182 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 FGF21Q9NSA1 209 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 ZKSCAN7Q9P0L1 754 aaPredicted RBP5.95□□□□□ -1.46
USP40-202ENST00000409945 TXNDC16Q9P2K2 825 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 PADI1Q9ULC6 663 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 TMCC3Q9ULS5 477 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 TMEM184BQ9Y519 407 aaPredicted RBP5.95□□□□□ -1.46
USP40-202ENST00000409945 A3GALT2U3KPV4 340 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 IGHV5-51A0A0C4DH38 117 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 A0A0J9YY10 115 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 hCG_1807616A0A1W2PRN6 198 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 GOLGA8TH3BQL2 631 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 ZBTB14O43829 449 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 KIF1CO43896 1103 aaKnown RBP5.95□□□□□ -1.46
USP40-202ENST00000409945 CNOT3O75175 753 aaKnown RBP5.95□□□□□ -1.46
USP40-202ENST00000409945 GPC4O75487 556 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 SCRG1O75711 98 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 KIAA0754O94854 1291 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 PGM3O95394 542 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 TFP02787 698 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 ACADLP28330 430 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 ARL3P36405 182 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 PEX19P40855 299 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 SRSF4Q08170 494 aaKnown RBP5.95□□□□□ -1.46
USP40-202ENST00000409945 SLC5A12Q1EHB4 618 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 SPESP1Q6UW49 350 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 LDB1Q86U70 411 aaPredicted RBP5.95□□□□□ -1.46
USP40-202ENST00000409945 HAPLN4Q86UW8 402 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 ANKRD13BQ86YJ7 626 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 PARP16Q8N5Y8 322 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 BMPERQ8N8U9 685 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 FAM76AQ8TAV0 307 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 LPGAT1Q92604 370 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 ERGIC1Q969X5 290 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 WBP1Q96G27 269 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 ELMO2Q96JJ3 720 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 EBNA1BP2Q99848 306 aaKnown RBP5.95□□□□□ -1.46
USP40-202ENST00000409945 P2RY12Q9H244 342 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 TAS2R13Q9NYV9 303 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 SPATA7Q9P0W8 599 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 MARCH4Q9P2E8 410 aaPredicted RBP5.95□□□□□ -1.46
USP40-202ENST00000409945 TRMT6Q9UJA5 497 aaKnown RBP5.95□□□□□ -1.46
USP40-202ENST00000409945 PILRAQ9UKJ1 303 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 FBXO5Q9UKT4 447 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 BTRCQ9Y297 605 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 AP1M2Q9Y6Q5 423 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 ZZEF1O43149 2961 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 WDFY3Q8IZQ1 3526 aa5.95□□□□□ -1.46
USP40-202ENST00000409945 COL27A1Q8IZC6 1860 aaPredicted RBP5.95□□□□□ -1.46
USP40-202ENST00000409945 SLC9B1P1A6NJY1 282 aa5.94□□□□□ -1.46
USP40-202ENST00000409945 TRIM64CA6NLI5 447 aa5.94□□□□□ -1.46
USP40-202ENST00000409945 IQCF5A8MTL0 148 aa5.94□□□□□ -1.46
USP40-202ENST00000409945 C21orf140B9A014 251 aa5.94□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms