RNA–Protein interactions for RNA: ENST00000404909.5

RTN4-208, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 4,102 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-208ENST00000404909 FCGR1AP12314 374 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 ZNF23P17027 643 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 SLC5A2P31639 672 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 TSPAN7P41732 249 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 EMDP50402 254 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 IST1P53990 364 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 PCBP3P57721 371 aaKnown RBP3.45□□□□□ -1.86
RTN4-208ENST00000404909 VLDLRP98155 873 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 ELAVL1Q15717 326 aaKnown RBP3.45□□□□□ -1.86
RTN4-208ENST00000404909 NRF1Q16656 503 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 SFT2D3Q587I9 215 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 CRB2Q5IJ48 1285 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 DCST2Q5T1A1 773 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 OTUD3Q5T2D3 398 aaPredicted RBP3.45□□□□□ -1.86
RTN4-208ENST00000404909 ZNF385CQ66K41 422 aaPredicted RBP3.45□□□□□ -1.86
RTN4-208ENST00000404909 IZUMO2Q6UXV1 221 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 ASCL5Q7RTU5 278 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 PIP4P1Q86T03 277 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 SLC30A8Q8IWU4 369 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 ZNF614Q8N883 585 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 TMEM102Q8N9M5 508 aaPredicted RBP3.45□□□□□ -1.86
RTN4-208ENST00000404909 OR52E4Q8NGH9 312 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 VANGL1Q8TAA9 524 aaPredicted RBP3.45□□□□□ -1.86
RTN4-208ENST00000404909 MIPOL1Q8TD10 442 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 SLC2A12Q8TD20 617 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 PROX1Q92786 737 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 DAZLQ92904 295 aaKnown RBP3.45□□□□□ -1.86
RTN4-208ENST00000404909 DUS3LQ96G46 650 aaKnown RBP3.45□□□□□ -1.86
RTN4-208ENST00000404909 CENPNQ96H22 339 aaPredicted RBP3.45□□□□□ -1.86
RTN4-208ENST00000404909 TRNT1Q96Q11 434 aaKnown RBP3.45□□□□□ -1.86
RTN4-208ENST00000404909 DEPDC7Q96QD5 511 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 PELOQ9BRX2 385 aaKnown RBP3.45□□□□□ -1.86
RTN4-208ENST00000404909 BDH2Q9BUT1 245 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 KLHL4Q9C0H6 718 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 FOLH1BQ9HBA9 442 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 AGPAT4Q9NRZ5 378 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 OLAHQ9NV23 265 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 FBXO34Q9NWN3 711 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 OAZ3Q9UMX2 235 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 ABCG2Q9UNQ0 655 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 SATB2Q9UPW6 733 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 LIPT1Q9Y234 373 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 WDR45Q9Y484 360 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 PCDHGB3Q9Y5G1 929 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 PCDHGA1Q9Y5H4 931 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 CDC14CA4D256 554 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 TMX2-CTNND1H3BSU7 103 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 ASNA1O43681 348 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 ALOX12BO75342 701 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 DEAF1O75398 565 aaPredicted RBP3.45□□□□□ -1.86
RTN4-208ENST00000404909 MFN2O95140 757 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 AGR2O95994 175 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 FESP07332 822 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 CCNYL3P0C7X3 344 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 RAB15P59190 212 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 POU6F2P78424 691 aaPredicted RBP3.45□□□□□ -1.86
RTN4-208ENST00000404909 KCNJ10P78508 379 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 PSG6Q00889 435 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 FUT7Q11130 342 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 TARDBPQ13148 414 aaKnown RBP eCLIP3.45□□□□□ -1.863e-9■■■■■ 47
RTN4-208ENST00000404909 BIKQ13323 160 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 LAPTM4AQ15012 233 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 IFI44LQ53G44 452 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 TMEM164Q5U3C3 297 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 ZBTB49Q6ZSB9 765 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 BBS10Q8TAM1 723 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 THAP3Q8WTV1 239 aaPredicted RBP3.45□□□□□ -1.86
RTN4-208ENST00000404909 TAAR9Q96RI9 348 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 SPSB2Q99619 263 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 ITPAQ9BY32 194 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 TGIF2Q9GZN2 237 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 NRSN2Q9GZP1 204 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 VCX3BQ9H321 246 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 PIGUQ9H490 435 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 COQ10BQ9H8M1 238 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 CACYBPQ9HB71 228 aaKnown RBP3.45□□□□□ -1.86
RTN4-208ENST00000404909 Q9N2J8 555 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 IL1RAPQ9NPH3 570 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 DUSP22Q9NRW4 184 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 C14orf105Q9NVL8 296 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 COPS7AQ9UBW8 275 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 SLC13A4Q9UKG4 626 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 PTRH2Q9Y3E5 179 aaKnown RBP3.45□□□□□ -1.86
RTN4-208ENST00000404909 DTNAQ9Y4J8 743 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 MAGED1Q9Y5V3 778 aaPredicted RBP3.45□□□□□ -1.86
RTN4-208ENST00000404909 ADAMTS20P59510 1910 aa3.45□□□□□ -1.86
RTN4-208ENST00000404909 IGLV3-12A0A075B6K2 115 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 CCDC187A0A096LP49 1063 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 A0A0G2JPF8 293 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 A0A1W2PNU3 283 aaPredicted RBP3.44□□□□□ -1.86
RTN4-208ENST00000404909 CLDN24A6NM45 220 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 TMEM229AB2RXF0 380 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 HNRNPCL2B2RXH8 293 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 HNRNPCL3B7ZW38 293 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 FOXD2O60548 495 aaPredicted RBP3.44□□□□□ -1.86
RTN4-208ENST00000404909 STX11O75558 287 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 SEC24DO94855 1032 aaPredicted RBP3.44□□□□□ -1.86
RTN4-208ENST00000404909 ZIC2O95409 532 aaPredicted RBP3.44□□□□□ -1.86
RTN4-208ENST00000404909 ALPPP05187 535 aa3.44□□□□□ -1.86
RTN4-208ENST00000404909 HNRNPCL4P0DMR1 293 aa3.44□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms