RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 ZDHHC2Q9UIJ5 367 aa6.84□□□□□ -1.32
UPF2-203ENST00000397053 ZNF223Q9UK11 482 aaPredicted RBP6.84□□□□□ -1.32
UPF2-203ENST00000397053 EMC9Q9Y3B6 208 aa6.84□□□□□ -1.32
UPF2-203ENST00000397053 B3GALT1Q9Y5Z6 326 aa6.84□□□□□ -1.32
UPF2-203ENST00000397053 MRPL33O75394 65 aaKnown RBP6.83□□□□□ -1.32
UPF2-203ENST00000397053 EPHA1P21709 976 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 RPS3P23396 243 aaKnown RBP eCLIP6.83□□□□□ -1.32
UPF2-203ENST00000397053 MAOBP27338 520 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 CRABP1P29762 137 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 CPOXP36551 454 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 SNCAP37840 140 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 LSSP48449 732 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 AGTR2P50052 363 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 RPS26P62854 115 aaKnown RBP6.83□□□□□ -1.32
UPF2-203ENST00000397053 ARL16Q0P5N6 197 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 C9orf152Q5JTZ5 239 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 PIAS4Q8N2W9 510 aaPredicted RBP6.83□□□□□ -1.32
UPF2-203ENST00000397053 NAT8LQ8N9F0 302 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 SDSLQ96GA7 329 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 ULBP3Q9BZM4 244 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 RANBP3Q9H6Z4 567 aaPredicted RBP6.83□□□□□ -1.32
UPF2-203ENST00000397053 YARS2Q9Y2Z4 477 aaKnown RBP6.83□□□□□ -1.32
UPF2-203ENST00000397053 INMT-MINDY4F8WBC2 141 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 K7ERQ8 282 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 MPIG6BO95866 241 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 PTHP01270 115 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 YES1P07947 543 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 PNMTP11086 282 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 ACRV1P26436 265 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 VASPP50552 380 aaPredicted RBP6.83□□□□□ -1.32
UPF2-203ENST00000397053 TUBA1BP68363 451 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 TUBA4AP68366 448 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 ADARB1P78563 741 aaKnown RBP6.83□□□□□ -1.32
UPF2-203ENST00000397053 HNRNPA0Q13151 305 aaKnown RBP6.83□□□□□ -1.32
UPF2-203ENST00000397053 ARHGAP19Q14CB8 494 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 KHDC1Q4VXA5 237 aaKnown RBP6.83□□□□□ -1.32
UPF2-203ENST00000397053 TRIM61Q5EBN2 209 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 ZNF517Q6ZMY9 492 aaPredicted RBP6.83□□□□□ -1.32
UPF2-203ENST00000397053 TUBA1AQ71U36 451 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 PHTF2Q8N3S3 785 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 LRRC57Q8N9N7 239 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 OR8J1Q8NGP2 316 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 TRMT2BQ96GJ1 504 aaKnown RBP6.83□□□□□ -1.32
UPF2-203ENST00000397053 FER1L6-AS2Q96M78 137 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 UTP23Q9BRU9 249 aaKnown RBP6.83□□□□□ -1.32
UPF2-203ENST00000397053 SLC19A3Q9BZV2 496 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 KCNK12Q9HB15 430 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 ARNT2Q9HBZ2 717 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 MAN2C1Q9NTJ4 1040 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 ZFP57Q9NU63 452 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 KLHL42Q9P2K6 505 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 GIMAP2Q9UG22 337 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 ERVK-19Q9WJR5 959 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 RNF6Q9Y252 685 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 A0A1B0GV50 99 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 ANKRD33BA6NCL7 494 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 SHISA7A6NL88 538 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 RNF225M0QZC1 329 aaPredicted RBP6.83□□□□□ -1.32
UPF2-203ENST00000397053 GSTP1P09211 210 aaKnown RBP6.83□□□□□ -1.32
UPF2-203ENST00000397053 CD79BP40259 229 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 SLC6A8P48029 635 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 ART1P52961 327 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 GRB7Q14451 532 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 GRIN2CQ14957 1233 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 AKR1C8PQ5T2L2 129 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 RNF220Q5VTB9 566 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 LIN28BQ6ZN17 250 aaKnown RBP eCLIP6.83□□□□□ -1.32
UPF2-203ENST00000397053 ZNF695Q8IW36 515 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 UMODL1-AS1Q8N2C9 162 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 RNF175Q8N4F7 328 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 CREB3L1Q96BA8 519 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 ZNF845Q96IR2 970 aaPredicted RBP6.83□□□□□ -1.32
UPF2-203ENST00000397053 MICU1Q9BPX6 476 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 SLC30A2Q9BRI3 323 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 APOOQ9BUR5 198 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 AGPAT4Q9NRZ5 378 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 SERTAD4Q9NUC0 356 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 HSPB11Q9Y547 144 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 LMTK2Q8IWU2 1503 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 QRICH2Q9H0J4 1663 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 PMM2O15305 246 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 UCHL1P09936 223 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 ACPPP15309 386 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 MSR1P21757 451 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 SPINT3P49223 89 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 CLDN2P57739 230 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 RPP30P78346 268 aaKnown RBP6.83□□□□□ -1.32
UPF2-203ENST00000397053 OLIG2Q13516 323 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 MBTPS1Q14703 1052 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 C9orf135Q5VTT2 229 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 TMEM205Q6UW68 189 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 IL20RBQ6UXL0 311 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 RPS27LQ71UM5 84 aaKnown RBP6.83□□□□□ -1.32
UPF2-203ENST00000397053 METTL25Q8N6Q8 603 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 OR4N2Q8NGD1 307 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 OR1S1Q8NH92 325 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 FBXL8Q96CD0 374 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 MTHFD2LQ9H903 347 aaPredicted RBP6.83□□□□□ -1.32
UPF2-203ENST00000397053 POPDC3Q9HBV1 291 aa6.83□□□□□ -1.32
UPF2-203ENST00000397053 ACTR10Q9NZ32 417 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms