RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 CCDC163A0A0D9SF12 145 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 A0A1W2PPW3 197 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 MEGF11A6BM72 1044 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 PBX2P40425 430 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 MTNR1AP48039 350 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 STK35Q8TDR2 534 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 TXNDC15Q96J42 360 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 FAIMQ9NVQ4 179 aa12.17□□□□□ -0.46
CCDC88C-204ENST00000389857 MYOCOSA0A1B0GUC4 107 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 CRABP1P29762 137 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 KDELR2P33947 212 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 SSTP61278 116 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 MINDY1Q8N5J2 469 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 METTL2AQ96IZ6 378 aaKnown RBP12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 SERINC2Q96SA4 455 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 GIMAP2Q9UG22 337 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 HTR3BO95264 441 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 MMP2P08253 660 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 DDCP20711 480 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 DIO3P55073 304 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 SLC35F2Q8IXU6 374 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 CREB3L4Q8TEY5 395 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 SGCZQ96LD1 299 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 BIRC8Q96P09 236 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 ZBTB20Q9HC78 741 aaPredicted RBP12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 ZNF28P17035 718 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 MAOAP21397 527 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 ABHD17BQ5VST6 288 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 TMEM151AQ8N4L1 468 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 DNAJC22Q8N4W6 341 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 ZNF610Q8N9Z0 462 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 ACBD4Q8NC06 268 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 SFXN5Q8TD22 340 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 SNAPC3Q92966 411 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 SIGLEC10Q96LC7 697 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 MRI1Q9BV20 369 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 DPCDQ9BVM2 203 aaPredicted RBP12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 ABCG5Q9H222 651 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 PELI2Q9HAT8 420 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 AIG1Q9NVV5 245 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 CA14Q9ULX7 337 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 FMO6PO60774 539 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 F2P00734 622 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 PTH2RP49190 550 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 STK19P49842 368 aaPredicted RBP12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 CLCN2P51788 898 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 NIPAL3Q6P499 406 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 TMEM150AQ86TG1 271 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 SGPP2Q8IWX5 399 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 NLGN4XQ8N0W4 816 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 GTPBP8Q8N3Z3 284 aaPredicted RBP12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 ENDOVQ8N8Q3 282 aaKnown RBP12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 OR9K2Q8NGE7 335 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 ECHDC3Q96DC8 303 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 NECTIN4Q96NY8 510 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 TXN2Q99757 166 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 TRAPPC13A5PLN9 417 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 CRTAPO75718 401 aaPredicted RBP12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 TOXO94900 526 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 SLC34A2O95436 690 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 CHRNB4P30926 498 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 HSD17B7P56937 341 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 CTXN1P60606 82 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 HHEXQ03014 270 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 GK3PQ14409 553 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 GRB7Q14451 532 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 HDHD5Q9BXW7 423 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 MRPL15Q9P015 296 aaKnown RBP12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 TMEM59LQ9UK28 342 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 C12orf71A8MTZ7 269 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 PABPC4LP0CB38 370 aaKnown RBP12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 ALDH3B1P43353 468 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 CLDN8P56748 225 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 SERTAD2Q14140 314 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 CST6Q15828 149 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 SMYD5Q6GMV2 418 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 ZNF704Q6ZNC4 412 aaPredicted RBP12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 MRPL21Q7Z2W9 205 aaKnown RBP12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 LGALS12Q96DT0 336 aa12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 LIN28AQ9H9Z2 209 aaKnown RBP12.16□□□□□ -0.46
CCDC88C-204ENST00000389857 HEPACAM2A8MVW5 462 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 ADAMTS4O75173 837 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 SC5DO75845 299 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 CLIC3O95833 236 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 ZNF136P52737 540 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 EIF4HQ15056 248 aaKnown RBP12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 KIF18BQ86Y91 864 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 CNTNAP3BQ96NU0 1288 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 CWH43Q9H720 699 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 APMAPQ9HDC9 416 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 STSP08842 583 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 UBL4AP11441 157 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 EIF2B1Q14232 305 aaKnown RBP12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 GK2Q14410 553 aaPredicted RBP12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 LARP4Q71RC2 724 aaKnown RBP eCLIP12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 OR1S1Q8NH92 325 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 GPN2Q9H9Y4 310 aaPredicted RBP12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 TMEM45AQ9NWC5 275 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 SCML1Q9UN30 329 aa12.15□□□□□ -0.46
CCDC88C-204ENST00000389857 SHPRHQ149N8 1683 aa12.15□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms