RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 USP43Q70EL4 1123 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 ZBTB46Q86UZ6 589 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 COMTD1Q86VU5 262 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 CAMKVQ8NCB2 501 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 OR6T1Q8NGN1 323 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 OR6Q1Q8NGQ2 317 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 CCL4L1Q8NHW4 92 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 SLC38A1Q9H2H9 487 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 C6orf106Q9H6K1 298 aaPredicted RBP20.19■□□□□ 0.82
TRIM54-202ENST00000380075 A3GALT2U3KPV4 340 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 hCG_2014768A0A024R1R8 64 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 GIMAP1-GIMAP5A0A087WTJ2 511 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 EPPINO95925 133 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 PTHP01270 115 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 CPN2P22792 545 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 IFNGR2P38484 337 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 RPL6Q02878 288 aaKnown RBP20.19■□□□□ 0.82
TRIM54-202ENST00000380075 ILF3Q12906 894 aaKnown RBP eCLIP20.19■□□□□ 0.82
TRIM54-202ENST00000380075 C1orf94Q6P1W5 598 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 IGFN1Q86VF2 1251 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 TRIM48Q8IWZ4 208 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 OR4K5Q8NGD3 323 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 CHPT1Q8WUD6 406 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 RPL3LQ92901 407 aaKnown RBP20.19■□□□□ 0.82
TRIM54-202ENST00000380075 GIMAP5Q96F15 307 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 C16orf58Q96GQ5 468 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 MS4A4EQ96PG1 132 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 ARHGDIGQ99819 225 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 SLIRPQ9GZT3 109 aaKnown RBP20.19■□□□□ 0.82
TRIM54-202ENST00000380075 ANKRD19PQ9H560 264 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 ACTR10Q9NZ32 417 aa20.19■□□□□ 0.82
TRIM54-202ENST00000380075 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa20.18■□□□□ 0.82
TRIM54-202ENST00000380075 M0R129 80 aa20.18■□□□□ 0.82
TRIM54-202ENST00000380075 B3GALT2O43825 422 aa20.18■□□□□ 0.82
TRIM54-202ENST00000380075 MAGP20916 626 aa20.18■□□□□ 0.82
TRIM54-202ENST00000380075 PRKAR1BP31321 381 aa20.18■□□□□ 0.82
TRIM54-202ENST00000380075 IFNA8P32881 189 aa20.18■□□□□ 0.82
TRIM54-202ENST00000380075 IDUAP35475 653 aa20.18■□□□□ 0.82
TRIM54-202ENST00000380075 FOXD4Q12950 439 aaPredicted RBP20.18■□□□□ 0.82
TRIM54-202ENST00000380075 OCLNQ16625 522 aa20.18■□□□□ 0.82
TRIM54-202ENST00000380075 TIMM50Q3ZCQ8 353 aa20.18■□□□□ 0.82
TRIM54-202ENST00000380075 ARMCX4Q5H9R4 360 aa20.18■□□□□ 0.82
TRIM54-202ENST00000380075 ZNF311Q5JNZ3 666 aa20.18■□□□□ 0.82
TRIM54-202ENST00000380075 FIGLAQ6QHK4 219 aa20.18■□□□□ 0.82
TRIM54-202ENST00000380075 ABHD13Q7L211 337 aa20.18■□□□□ 0.82
TRIM54-202ENST00000380075 C16orf62Q7Z3J2 963 aa20.18■□□□□ 0.82
TRIM54-202ENST00000380075 TMEFF1Q8IYR6 380 aa20.18■□□□□ 0.82
TRIM54-202ENST00000380075 DRAXINQ8NBI3 349 aaPredicted RBP20.18■□□□□ 0.82
TRIM54-202ENST00000380075 MORN4Q8NDC4 146 aa20.18■□□□□ 0.82
TRIM54-202ENST00000380075 KBTBD8Q8NFY9 601 aa20.18■□□□□ 0.82
TRIM54-202ENST00000380075 RSC1A1Q92681 617 aa20.18■□□□□ 0.82
TRIM54-202ENST00000380075 COX4I2Q96KJ9 171 aa20.18■□□□□ 0.82
TRIM54-202ENST00000380075 DACH2Q96NX9 599 aa20.18■□□□□ 0.82
TRIM54-202ENST00000380075 DCSTAMPQ9H295 470 aa20.18■□□□□ 0.82
TRIM54-202ENST00000380075 MAN2C1Q9NTJ4 1040 aa20.18■□□□□ 0.82
TRIM54-202ENST00000380075 POT1Q9NUX5 634 aa20.18■□□□□ 0.82
TRIM54-202ENST00000380075 KCMF1Q9P0J7 381 aa20.18■□□□□ 0.82
TRIM54-202ENST00000380075 SLC6A14Q9UN76 642 aa20.18■□□□□ 0.82
TRIM54-202ENST00000380075 RPL36Q9Y3U8 105 aaKnown RBP20.18■□□□□ 0.82
TRIM54-202ENST00000380075 EML5Q05BV3 1969 aa20.18■□□□□ 0.82
TRIM54-202ENST00000380075 GADD45AP24522 165 aa20.17■□□□□ 0.82
TRIM54-202ENST00000380075 RABIFP47224 123 aa20.17■□□□□ 0.82
TRIM54-202ENST00000380075 KHDRBS1Q07666 443 aaKnown RBP eCLIP20.17■□□□□ 0.82
TRIM54-202ENST00000380075 RGS21Q2M5E4 152 aa20.17■□□□□ 0.82
TRIM54-202ENST00000380075 ENTPD8Q5MY95 495 aa20.17■□□□□ 0.82
TRIM54-202ENST00000380075 SLC25A30Q5SVS4 291 aa20.17■□□□□ 0.82
TRIM54-202ENST00000380075 HEPHL1Q6MZM0 1159 aa20.17■□□□□ 0.82
TRIM54-202ENST00000380075 SLC36A4Q6YBV0 504 aa20.17■□□□□ 0.82
TRIM54-202ENST00000380075 OR4K14Q8NGD5 310 aa20.17■□□□□ 0.82
TRIM54-202ENST00000380075 KLHL6Q8WZ60 621 aa20.17■□□□□ 0.82
TRIM54-202ENST00000380075 OTUB1Q96FW1 271 aaPredicted RBP20.17■□□□□ 0.82
TRIM54-202ENST00000380075 KLHL28Q9NXS3 571 aa20.17■□□□□ 0.82
TRIM54-202ENST00000380075 PILRAQ9UKJ1 303 aa20.17■□□□□ 0.82
TRIM54-202ENST00000380075 CCDC88CQ9P219 2028 aa20.17■□□□□ 0.82
TRIM54-202ENST00000380075 CACNA1HO95180 2353 aa20.17■□□□□ 0.82
TRIM54-202ENST00000380075 ENTPD6O75354 484 aa20.17■□□□□ 0.82
TRIM54-202ENST00000380075 SOX14O95416 240 aa20.17■□□□□ 0.82
TRIM54-202ENST00000380075 RGS6P49758 472 aa20.17■□□□□ 0.82
TRIM54-202ENST00000380075 NCF4Q15080 339 aa20.17■□□□□ 0.82
TRIM54-202ENST00000380075 FAM214AQ32MH5 1076 aa20.17■□□□□ 0.82
TRIM54-202ENST00000380075 MANEAQ5SRI9 462 aa20.17■□□□□ 0.82
TRIM54-202ENST00000380075 RNLSQ5VYX0 342 aa20.17■□□□□ 0.82
TRIM54-202ENST00000380075 CDC73Q6P1J9 531 aa20.17■□□□□ 0.82
TRIM54-202ENST00000380075 ADAMTS15Q8TE58 950 aa20.17■□□□□ 0.82
TRIM54-202ENST00000380075 FCRL4Q96PJ5 515 aa20.17■□□□□ 0.82
TRIM54-202ENST00000380075 POLDIP3Q9BY77 421 aaKnown RBP20.17■□□□□ 0.82
TRIM54-202ENST00000380075 LYRM4Q9HD34 91 aa20.17■□□□□ 0.82
TRIM54-202ENST00000380075 PTGFRNQ9P2B2 879 aa20.17■□□□□ 0.82
TRIM54-202ENST00000380075 KCNE3Q9Y6H6 103 aa20.17■□□□□ 0.82
TRIM54-202ENST00000380075 PMF1-BGLAPU3KQ54 211 aa20.17■□□□□ 0.82
TRIM54-202ENST00000380075 C10orf142B7Z368 130 aa20.16■□□□□ 0.82
TRIM54-202ENST00000380075 SULT1C4O75897 302 aa20.16■□□□□ 0.82
TRIM54-202ENST00000380075 TNFP01375 233 aa20.16■□□□□ 0.82
TRIM54-202ENST00000380075 TP53P04637 393 aaPredicted RBP20.16■□□□□ 0.82
TRIM54-202ENST00000380075 MMP11P24347 488 aa20.16■□□□□ 0.82
TRIM54-202ENST00000380075 PTGER1P34995 402 aa20.16■□□□□ 0.82
TRIM54-202ENST00000380075 RHAGQ02094 409 aa20.16■□□□□ 0.82
TRIM54-202ENST00000380075 GPR18Q14330 331 aa20.16■□□□□ 0.82
TRIM54-202ENST00000380075 INAVAQ3KP66 663 aa20.16■□□□□ 0.82
TRIM54-202ENST00000380075 MFSD4BQ5TF39 518 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms