RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 ISXQ2M1V0 245 aa13.41□□□□□ -0.26
HMGA1-203ENST00000374116 MPEG1Q2M385 716 aa13.41□□□□□ -0.26
HMGA1-203ENST00000374116 CCNJQ5T5M9 372 aa13.41□□□□□ -0.26
HMGA1-203ENST00000374116 SYT6Q5T7P8 510 aaPredicted RBP13.41□□□□□ -0.26
HMGA1-203ENST00000374116 RSBN1Q5VWQ0 802 aaPredicted RBP13.41□□□□□ -0.26
HMGA1-203ENST00000374116 CDCP2Q5VXM1 449 aa13.41□□□□□ -0.26
HMGA1-203ENST00000374116 KIAA1614Q5VZ46 1190 aa13.41□□□□□ -0.26
HMGA1-203ENST00000374116 ZNF544Q6NX49 715 aa13.41□□□□□ -0.26
HMGA1-203ENST00000374116 FAHD1Q6P587 224 aa13.41□□□□□ -0.26
HMGA1-203ENST00000374116 ANGPTL8Q6UXH0 198 aa13.41□□□□□ -0.26
HMGA1-203ENST00000374116 RFPL4BQ6ZWI9 263 aa13.41□□□□□ -0.26
HMGA1-203ENST00000374116 TUBA1AQ71U36 451 aa13.41□□□□□ -0.26
HMGA1-203ENST00000374116 GALNT5Q7Z7M9 940 aa13.41□□□□□ -0.26
HMGA1-203ENST00000374116 P2RY8Q86VZ1 359 aa13.41□□□□□ -0.26
HMGA1-203ENST00000374116 NATD1Q8N6N6 113 aa13.41□□□□□ -0.26
HMGA1-203ENST00000374116 OR4D9Q8NGE8 314 aa13.41□□□□□ -0.26
HMGA1-203ENST00000374116 OR6F1Q8NGZ6 308 aa13.41□□□□□ -0.26
HMGA1-203ENST00000374116 ADAMTS14Q8WXS8 1223 aa13.41□□□□□ -0.26
HMGA1-203ENST00000374116 MAL2Q969L2 176 aa13.41□□□□□ -0.26
HMGA1-203ENST00000374116 CIDECQ96AQ7 238 aaPredicted RBP13.41□□□□□ -0.26
HMGA1-203ENST00000374116 APOL4Q9BPW4 351 aa13.41□□□□□ -0.26
HMGA1-203ENST00000374116 MMP27Q9H306 513 aa13.41□□□□□ -0.26
HMGA1-203ENST00000374116 RIBC2Q9H4K1 309 aa13.41□□□□□ -0.26
HMGA1-203ENST00000374116 POLE4Q9NR33 117 aa13.41□□□□□ -0.26
HMGA1-203ENST00000374116 GPATCH2Q9NW75 528 aa13.41□□□□□ -0.26
HMGA1-203ENST00000374116 THUMPD1Q9NXG2 353 aaKnown RBP13.41□□□□□ -0.26
HMGA1-203ENST00000374116 KIF17Q9P2E2 1029 aa13.41□□□□□ -0.26
HMGA1-203ENST00000374116 PCDHGB3Q9Y5G1 929 aa13.41□□□□□ -0.26
HMGA1-203ENST00000374116 ENTPD2Q9Y5L3 495 aa13.41□□□□□ -0.26
HMGA1-203ENST00000374116 AKAP13Q12802 2813 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 A0A1W2PNU3 283 aaPredicted RBP13.4□□□□□ -0.26
HMGA1-203ENST00000374116 A0A1W2PRB8 838 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 SLC9B1P1A6NJY1 282 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 A6NL46 340 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 MAN1A2O60476 641 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 GCM2O75603 506 aaPredicted RBP13.4□□□□□ -0.26
HMGA1-203ENST00000374116 SNX4O95219 450 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 IL3P08700 152 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 TRAPPC2P0DI81 140 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 TRAPPC2BP0DI82 140 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 UBL4AP11441 157 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 ETFAP13804 333 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 AGXTP21549 392 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 PRIM2P49643 509 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 CCR8P51685 355 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 MVKQ03426 396 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 SLC13A2Q13183 592 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 RAPSNQ13702 412 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 DUSP7Q16829 419 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 ZNF630Q2M218 657 aaPredicted RBP13.4□□□□□ -0.26
HMGA1-203ENST00000374116 COX20Q5RI15 118 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 RAB42Q8N4Z0 105 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 OR2A1Q8NGT9 310 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 ZDHHC12Q96GR4 267 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 DHRS9Q9BPW9 319 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 MS4A8Q9BY19 250 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 DGCR6LQ9BY27 220 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 MIEF1Q9NQG6 463 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 C1GALT1Q9NS00 363 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 KRT84Q9NSB2 600 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 KLK13Q9UKR3 277 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 POMT2Q9UKY4 750 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 N6AMT1Q9Y5N5 214 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 MAU2Q9Y6X3 613 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 FREM2Q5SZK8 3169 aa13.4□□□□□ -0.26
HMGA1-203ENST00000374116 IGKV1-8A0A0C4DH67 115 aa13.39□□□□□ -0.27
HMGA1-203ENST00000374116 TMEM229AB2RXF0 380 aa13.39□□□□□ -0.27
HMGA1-203ENST00000374116 PRICKLE3O43900 615 aaPredicted RBP13.39□□□□□ -0.27
HMGA1-203ENST00000374116 TBX19O60806 448 aa13.39□□□□□ -0.27
HMGA1-203ENST00000374116 CCNKO75909 580 aa13.39□□□□□ -0.27
HMGA1-203ENST00000374116 IFNA14P01570 189 aa13.39□□□□□ -0.27
HMGA1-203ENST00000374116 SPTBP11277 2137 aa13.39□□□□□ -0.27
HMGA1-203ENST00000374116 DDX5P17844 614 aaKnown RBP13.39□□□□□ -0.27
HMGA1-203ENST00000374116 MAGP20916 626 aa13.39□□□□□ -0.27
HMGA1-203ENST00000374116 AQP1P29972 269 aa13.39□□□□□ -0.27
HMGA1-203ENST00000374116 CHI3L1P36222 383 aaPredicted RBP13.39□□□□□ -0.27
HMGA1-203ENST00000374116 DDOSTP39656 456 aa13.39□□□□□ -0.27
HMGA1-203ENST00000374116 CLK3P49761 638 aaKnown RBP13.39□□□□□ -0.27
HMGA1-203ENST00000374116 CXCR4P61073 352 aa13.39□□□□□ -0.27
HMGA1-203ENST00000374116 ZNF45Q02386 682 aa13.39□□□□□ -0.27
HMGA1-203ENST00000374116 ZFP36L1Q07352 338 aaKnown RBP13.39□□□□□ -0.27
HMGA1-203ENST00000374116 SCARB2Q14108 478 aa13.39□□□□□ -0.27
HMGA1-203ENST00000374116 LAPTM4AQ15012 233 aa13.39□□□□□ -0.27
HMGA1-203ENST00000374116 MAPK11Q15759 364 aa13.39□□□□□ -0.27
HMGA1-203ENST00000374116 ZIC1Q15915 447 aa13.39□□□□□ -0.27
HMGA1-203ENST00000374116 PRSS53Q2L4Q9 553 aa13.39□□□□□ -0.27
HMGA1-203ENST00000374116 KHDRBS2Q5VWX1 349 aaKnown RBP13.39□□□□□ -0.27
HMGA1-203ENST00000374116 STEAP3Q658P3 488 aa13.39□□□□□ -0.27
HMGA1-203ENST00000374116 PAGE2Q7Z2X7 111 aa13.39□□□□□ -0.27
HMGA1-203ENST00000374116 SLC30A8Q8IWU4 369 aa13.39□□□□□ -0.27
HMGA1-203ENST00000374116 TTC29Q8NA56 475 aaPredicted RBP13.39□□□□□ -0.27
HMGA1-203ENST00000374116 ATG16L2Q8NAA4 619 aa13.39□□□□□ -0.27
HMGA1-203ENST00000374116 IL17RDQ8NFM7 739 aa13.39□□□□□ -0.27
HMGA1-203ENST00000374116 SGCDQ92629 289 aa13.39□□□□□ -0.27
HMGA1-203ENST00000374116 QRFPRQ96P65 431 aa13.39□□□□□ -0.27
HMGA1-203ENST00000374116 FCRL4Q96PJ5 515 aa13.39□□□□□ -0.27
HMGA1-203ENST00000374116 RAB11FIP5Q9BXF6 653 aa13.39□□□□□ -0.27
HMGA1-203ENST00000374116 EPS8L2Q9H6S3 715 aa13.39□□□□□ -0.27
HMGA1-203ENST00000374116 RUBCNLQ9H714 662 aa13.39□□□□□ -0.27
HMGA1-203ENST00000374116 TMA7Q9Y2S6 64 aaKnown RBP13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms