RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 EPPINO95925 133 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 IL1AP01583 271 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 CEBPBP17676 345 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 PCBP4P57723 403 aaKnown RBP11.41□□□□□ -0.58
CLIP3-201ENST00000360535 CAMK1Q14012 370 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 LTB4RQ15722 352 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 WSCD2Q2TBF2 565 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 GLYR1Q49A26 553 aaPredicted RBP11.41□□□□□ -0.58
CLIP3-201ENST00000360535 KLHL12Q53G59 568 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 OR4C11Q6IEV9 310 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 FAM26EQ8N5C1 309 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 C12orf76Q8N812 135 aaPredicted RBP11.41□□□□□ -0.58
CLIP3-201ENST00000360535 ZNF296Q8WUU4 475 aaPredicted RBP11.41□□□□□ -0.58
CLIP3-201ENST00000360535 VWCEQ96DN2 955 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 SLC38A2Q96QD8 506 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 SECISBP2Q96T21 854 aaKnown RBP11.41□□□□□ -0.58
CLIP3-201ENST00000360535 SEMA4GQ9NTN9 838 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 ATG4BQ9Y4P1 393 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 ALPK2Q86TB3 2170 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 TBC1D3BA6NDS4 549 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 NOTOA8MTQ0 251 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 PAPLNO95428 1278 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 YES1P07947 543 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 CPEP16870 476 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 DDOSTP39656 456 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 MC3RP41968 323 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 MAP2K3P46734 347 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 STXBP1P61764 594 aaKnown RBP11.41□□□□□ -0.58
CLIP3-201ENST00000360535 HTRA3P83110 453 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 OCLNQ16625 522 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11.41□□□□□ -0.58
CLIP3-201ENST00000360535 LYPD8Q6UX82 237 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 SLC36A4Q6YBV0 504 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 FAM92BQ6ZTR7 304 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 UBE3DQ7Z6J8 389 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 OR4N5Q8IXE1 308 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 TP53I13Q8NBR0 393 aaPredicted RBP11.41□□□□□ -0.58
CLIP3-201ENST00000360535 TMEM145Q8NBT3 493 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 DHRS1Q96LJ7 313 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 SNX18Q96RF0 628 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 MRPS23Q9Y3D9 190 aaKnown RBP11.41□□□□□ -0.58
CLIP3-201ENST00000360535 IQCMA0A1B0GVH7 501 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 ARRDC5A6NEK1 342 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 OTOL1A6NHN0 477 aaPredicted RBP11.41□□□□□ -0.58
CLIP3-201ENST00000360535 FCMRO60667 390 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 PPM1AP35813 382 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 IL12RB1P42701 662 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 RPS7P62081 194 aaKnown RBP11.41□□□□□ -0.58
CLIP3-201ENST00000360535 PLK5Q496M5 336 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 TOR1AIP1Q5JTV8 583 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 TMEM201Q5SNT2 666 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 FCRLBQ6BAA4 426 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 C16orf62Q7Z3J2 963 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 NRSN1Q8IZ57 195 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 SPRYD4Q8WW59 207 aaPredicted RBP11.41□□□□□ -0.58
CLIP3-201ENST00000360535 RASSF5Q8WWW0 418 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 QRFPRQ96P65 431 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 TMEM245Q9H330 911 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 C6orf106Q9H6K1 298 aaPredicted RBP11.41□□□□□ -0.58
CLIP3-201ENST00000360535 TRIM45Q9H8W5 580 aaPredicted RBP11.41□□□□□ -0.58
CLIP3-201ENST00000360535 ALG5Q9Y673 324 aa11.41□□□□□ -0.58
CLIP3-201ENST00000360535 A0A1W2PRQ8 180 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 SHISA3A0PJX4 238 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 SOCS6O14544 535 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 PRODHO43272 600 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 PAK4O96013 591 aaPredicted RBP11.4□□□□□ -0.58
CLIP3-201ENST00000360535 LIMS3P0CW19 117 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 LIMS4P0CW20 117 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 DDX5P17844 614 aaKnown RBP11.4□□□□□ -0.58
CLIP3-201ENST00000360535 CERS1P27544 350 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 AHRP35869 848 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 TRIM23P36406 574 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 RGS8P57771 180 aaPredicted RBP11.4□□□□□ -0.58
CLIP3-201ENST00000360535 ZNF77Q15935 545 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 PLEKHM3Q6ZWE6 761 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 NRMQ8IXM6 262 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 LINC01555Q8NAE3 123 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 OR9A2Q8NGT5 310 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 PHF21AQ96BD5 680 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 IRF2BPLQ9H1B7 796 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 DDX31Q9H8H2 851 aaKnown RBP11.4□□□□□ -0.58
CLIP3-201ENST00000360535 GALNT9Q9HCQ5 603 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 KLHL1Q9NR64 748 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 DKK3Q9UBP4 350 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 ZFR2Q9UPR6 939 aaKnown RBP11.4□□□□□ -0.58
CLIP3-201ENST00000360535 MRPS7Q9Y2R9 242 aaKnown RBP11.4□□□□□ -0.58
CLIP3-201ENST00000360535 PLXNA2O75051 1894 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 MDC1Q14676 2089 aaKnown RBP11.4□□□□□ -0.58
CLIP3-201ENST00000360535 A0A1W2PPK0 400 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 ACP2P11117 423 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 ITGB7P26010 798 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 TRHRP34981 398 aaPredicted RBP11.4□□□□□ -0.58
CLIP3-201ENST00000360535 HTR2BP41595 481 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 ID2Q02363 134 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 PCDH1Q08174 1060 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 E2F2Q14209 437 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 SLC9A5Q14940 896 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 FAM27D1Q5T7N8 215 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 KRT74Q7RTS7 529 aa11.4□□□□□ -0.58
CLIP3-201ENST00000360535 LRRTM4Q86VH4 590 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms