RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 CHI3L1P36222 383 aaPredicted RBP20.43■□□□□ 0.86
SHMT1-203ENST00000354098 PRIM2P49643 509 aa20.43■□□□□ 0.86
SHMT1-203ENST00000354098 TNFSF10P50591 281 aa20.43■□□□□ 0.86
SHMT1-203ENST00000354098 NRG3P56975 720 aa20.43■□□□□ 0.86
SHMT1-203ENST00000354098 OR1C1Q15619 314 aa20.43■□□□□ 0.86
SHMT1-203ENST00000354098 ZNF791Q3KP31 576 aaPredicted RBP20.43■□□□□ 0.86
SHMT1-203ENST00000354098 ZCCHC12Q6PEW1 402 aa20.43■□□□□ 0.86
SHMT1-203ENST00000354098 OPN5Q6U736 354 aa20.43■□□□□ 0.86
SHMT1-203ENST00000354098 MSRB3Q8IXL7 192 aa20.43■□□□□ 0.86
SHMT1-203ENST00000354098 POU5F2Q8N7G0 328 aa20.43■□□□□ 0.86
SHMT1-203ENST00000354098 ANKS4BQ8N8V4 417 aa20.43■□□□□ 0.86
SHMT1-203ENST00000354098 OR5D16Q8NGK9 328 aa20.43■□□□□ 0.86
SHMT1-203ENST00000354098 PNPT1Q8TCS8 783 aaKnown RBP20.43■□□□□ 0.86
SHMT1-203ENST00000354098 BCAS4Q8TDM0 211 aa20.43■□□□□ 0.86
SHMT1-203ENST00000354098 GPR151Q8TDV0 419 aa20.43■□□□□ 0.86
SHMT1-203ENST00000354098 ZFP90Q8TF47 636 aa20.43■□□□□ 0.86
SHMT1-203ENST00000354098 TMBIM1Q969X1 311 aa20.43■□□□□ 0.86
SHMT1-203ENST00000354098 NEURL3Q96EH8 262 aa20.43■□□□□ 0.86
SHMT1-203ENST00000354098 BBC3Q96PG8 261 aaPredicted RBP20.43■□□□□ 0.86
SHMT1-203ENST00000354098 ACTRT3Q9BYD9 372 aa20.43■□□□□ 0.86
SHMT1-203ENST00000354098 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP20.43■□□□□ 0.86
SHMT1-203ENST00000354098 TRIM45Q9H8W5 580 aaPredicted RBP20.43■□□□□ 0.86
SHMT1-203ENST00000354098 SLC25A37Q9NYZ2 338 aa20.43■□□□□ 0.86
SHMT1-203ENST00000354098 MAP10Q9P2G4 905 aa20.43■□□□□ 0.86
SHMT1-203ENST00000354098 FAF1Q9UNN5 650 aaPredicted RBP20.43■□□□□ 0.86
SHMT1-203ENST00000354098 OR10H1Q9Y4A9 318 aa20.43■□□□□ 0.86
SHMT1-203ENST00000354098 BSNQ9UPA5 3926 aa20.43■□□□□ 0.86
SHMT1-203ENST00000354098 ATRXP46100 2492 aa20.43■□□□□ 0.86
SHMT1-203ENST00000354098 GXYLT2A0PJZ3 443 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 A8MVJ9 347 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 DPM1O60762 260 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 NKX2-2O95096 273 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 ZCCHC18P0CG32 403 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 MATN1P21941 496 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 CASRP41180 1078 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 MAN2A2P49641 1150 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 NADK2Q4G0N4 442 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 COLEC12Q5KU26 742 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 LRIF1Q5T3J3 769 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 DESI1Q6ICB0 168 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 CDC73Q6P1J9 531 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 MDGA2Q7Z553 956 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 OR5M3Q8NGP4 307 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 SPACA9Q96E40 222 aaPredicted RBP20.42■□□□□ 0.86
SHMT1-203ENST00000354098 OMA1Q96E52 524 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 SLC35A4Q96G79 324 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 SLC35G5Q96KT7 338 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 HPF1Q9NWY4 346 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 KCNE3Q9Y6H6 103 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 NDUFAB1O14561 156 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 ALOX5P09917 674 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 FBXO45P0C2W1 286 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 FBXW4P57775 412 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 PLCXD2Q0VAA5 305 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 CYLC2Q14093 348 aaPredicted RBP20.42■□□□□ 0.86
SHMT1-203ENST00000354098 ANGPTL8Q6UXH0 198 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 DLEU7Q6UYE1 221 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 RNF130Q86XS8 419 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 PTRH1Q86Y79 214 aaKnown RBP20.42■□□□□ 0.86
SHMT1-203ENST00000354098 CYP4Z2PQ8N1L4 340 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 CCDC197Q8NCU1 140 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 MDS2Q8NDY4 140 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 HES7Q9BYE0 225 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 IL1RL2Q9HB29 575 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 Q9N2J8 555 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 VAPAQ9P0L0 249 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 CBLCQ9ULV8 474 aa20.42■□□□□ 0.86
SHMT1-203ENST00000354098 ZFYVE26Q68DK2 2539 aa20.41■□□□□ 0.86
SHMT1-203ENST00000354098 KCNH1O95259 989 aa20.41■□□□□ 0.86
SHMT1-203ENST00000354098 MAPRE2Q15555 327 aa20.41■□□□□ 0.86
SHMT1-203ENST00000354098 Q6ZS92 163 aa20.41■□□□□ 0.86
SHMT1-203ENST00000354098 HPS6Q86YV9 775 aa20.41■□□□□ 0.86
SHMT1-203ENST00000354098 SLC34A3Q8N130 599 aa20.41■□□□□ 0.86
SHMT1-203ENST00000354098 DPP10Q8N608 796 aa20.41■□□□□ 0.86
SHMT1-203ENST00000354098 ADAMTS15Q8TE58 950 aa20.41■□□□□ 0.86
SHMT1-203ENST00000354098 CDS1Q92903 461 aa20.41■□□□□ 0.86
SHMT1-203ENST00000354098 LRRC37BQ96QE4 947 aa20.41■□□□□ 0.86
SHMT1-203ENST00000354098 OR7D2Q96RA2 312 aa20.41■□□□□ 0.86
SHMT1-203ENST00000354098 OR51I1Q9H343 314 aa20.41■□□□□ 0.86
SHMT1-203ENST00000354098 PIGUQ9H490 435 aa20.41■□□□□ 0.86
SHMT1-203ENST00000354098 TPT1P8Q9HAU6 139 aa20.41■□□□□ 0.86
SHMT1-203ENST00000354098 CAPN14A8MX76 684 aa20.4■□□□□ 0.86
SHMT1-203ENST00000354098 COX4I1P13073 169 aa20.4■□□□□ 0.86
SHMT1-203ENST00000354098 CYP27C1Q4G0S4 372 aa20.4■□□□□ 0.86
SHMT1-203ENST00000354098 COX20Q5RI15 118 aa20.4■□□□□ 0.86
SHMT1-203ENST00000354098 REP15Q6BDI9 236 aa20.4■□□□□ 0.86
SHMT1-203ENST00000354098 TNFAIP8L2Q6P589 184 aaPredicted RBP20.4■□□□□ 0.86
SHMT1-203ENST00000354098 GALNT10Q86SR1 603 aa20.4■□□□□ 0.86
SHMT1-203ENST00000354098 BCORP1Q8N888 145 aa20.4■□□□□ 0.86
SHMT1-203ENST00000354098 OR10G3Q8NGC4 313 aa20.4■□□□□ 0.86
SHMT1-203ENST00000354098 RP9Q8TA86 221 aaKnown RBP20.4■□□□□ 0.86
SHMT1-203ENST00000354098 EFHD2Q96C19 240 aaPredicted RBP20.4■□□□□ 0.86
SHMT1-203ENST00000354098 RMND5BQ96G75 393 aaPredicted RBP20.4■□□□□ 0.86
SHMT1-203ENST00000354098 LUZP4Q9P127 313 aa20.4■□□□□ 0.86
SHMT1-203ENST00000354098 RALYQ9UKM9 306 aaKnown RBP20.4■□□□□ 0.86
SHMT1-203ENST00000354098 CNTRLQ7Z7A1 2325 aa20.4■□□□□ 0.86
SHMT1-203ENST00000354098 TRBV5-3A0A0A0MS03 114 aa20.39■□□□□ 0.86
SHMT1-203ENST00000354098 TTC36A6NLP5 189 aa20.39■□□□□ 0.86
SHMT1-203ENST00000354098 CDK2AP1O14519 115 aa20.39■□□□□ 0.86
SHMT1-203ENST00000354098 REM1O75628 298 aa20.39■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms