RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 NPRL2Q8WTW4 380 aa12.03□□□□□ -0.48
COL6A3-203ENST00000353578 FANCGO15287 622 aa12.02□□□□□ -0.48
COL6A3-203ENST00000353578 UGDHO60701 494 aa12.02□□□□□ -0.48
COL6A3-203ENST00000353578 MFSD13AQ14CX5 517 aa12.02□□□□□ -0.48
COL6A3-203ENST00000353578 FAM117BQ6P1L5 589 aa12.02□□□□□ -0.48
COL6A3-203ENST00000353578 KDM8Q8N371 416 aa12.02□□□□□ -0.48
COL6A3-203ENST00000353578 NRG4Q8WWG1 115 aa12.02□□□□□ -0.48
COL6A3-203ENST00000353578 UHRF2Q96PU4 802 aa12.02□□□□□ -0.48
COL6A3-203ENST00000353578 ZCCHC4Q9H5U6 513 aa12.02□□□□□ -0.48
COL6A3-203ENST00000353578 MED16Q9Y2X0 877 aa12.02□□□□□ -0.48
COL6A3-203ENST00000353578 A0A1W2PQ45 241 aaPredicted RBP12.02□□□□□ -0.48
COL6A3-203ENST00000353578 A0A1W2PQY0 241 aa12.02□□□□□ -0.48
COL6A3-203ENST00000353578 RNF225M0QZC1 329 aaPredicted RBP12.02□□□□□ -0.48
COL6A3-203ENST00000353578 ADH1CP00326 375 aa12.02□□□□□ -0.48
COL6A3-203ENST00000353578 LAP3P28838 519 aa12.02□□□□□ -0.48
COL6A3-203ENST00000353578 C1QTNF8P60827 252 aa12.02□□□□□ -0.48
COL6A3-203ENST00000353578 APOFQ13790 326 aa12.02□□□□□ -0.48
COL6A3-203ENST00000353578 SLC18B1Q6NT16 456 aa12.02□□□□□ -0.48
COL6A3-203ENST00000353578 MCEMP1Q8IX19 187 aa12.02□□□□□ -0.48
COL6A3-203ENST00000353578 AKR7LQ8NHP1 331 aa12.02□□□□□ -0.48
COL6A3-203ENST00000353578 FAM163AQ96GL9 167 aaPredicted RBP12.02□□□□□ -0.48
COL6A3-203ENST00000353578 MTERF1Q99551 399 aaKnown RBP12.02□□□□□ -0.48
COL6A3-203ENST00000353578 DCAF13Q9NV06 445 aaKnown RBP12.02□□□□□ -0.48
COL6A3-203ENST00000353578 MROH1Q8NDA8 1641 aa12.02□□□□□ -0.48
COL6A3-203ENST00000353578 STSP08842 583 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 BMP4P12644 408 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 AKT2P31751 481 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 RPL13AP40429 203 aaKnown RBP12.02□□□□□ -0.49
COL6A3-203ENST00000353578 CASRP41180 1078 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 OR51G2Q8NGK0 314 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 C2orf15Q8WU43 125 aaKnown RBP12.02□□□□□ -0.49
COL6A3-203ENST00000353578 CCM2Q9BSQ5 444 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 MRPL22Q9NWU5 206 aaKnown RBP12.02□□□□□ -0.49
COL6A3-203ENST00000353578 PBX2P40425 430 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 EMX1Q04741 257 aaPredicted RBP12.02□□□□□ -0.49
COL6A3-203ENST00000353578 CNKSR3Q6P9H4 555 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 TMUB2Q71RG4 321 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 CMTM3Q96MX0 182 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 SPNS1Q9H2V7 528 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 ELOA3CA0A087WX78 387 aaPredicted RBP12.02□□□□□ -0.49
COL6A3-203ENST00000353578 LRIT2A6NDA9 550 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 TRIM77I1YAP6 450 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 KCNJ5P48544 419 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 PRPS1P60891 318 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 FAM98CQ17RN3 349 aaKnown RBP12.02□□□□□ -0.49
COL6A3-203ENST00000353578 INAVAQ3KP66 663 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 OTUD1Q5VV17 481 aaPredicted RBP12.02□□□□□ -0.49
COL6A3-203ENST00000353578 ZSCAN4Q8NAM6 433 aaPredicted RBP12.02□□□□□ -0.49
COL6A3-203ENST00000353578 OR4K1Q8NGD4 311 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 OR2T4Q8NH00 348 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 OSBPL2Q9H1P3 480 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 BEX1Q9HBH7 125 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 PRKAB1Q9Y478 270 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 CACNA1SQ13698 1873 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 C2orf78A6NCI8 922 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 HNF1AP20823 631 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 C15orf54Q8N8G6 183 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 C4orf32Q8N8J7 132 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 TMEM145Q8NBT3 493 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 PDCD2LQ9BRP1 358 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 ATRNL1Q5VV63 1379 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 C17orf112F2Z3M2 114 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 K7ERU9 68 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 CCKBRP32239 447 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 KLF1Q13351 362 aaPredicted RBP12.02□□□□□ -0.49
COL6A3-203ENST00000353578 LRRC26Q2I0M4 334 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 MLIPQ5VWP3 458 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 NLGN2Q8NFZ4 835 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 TRIB2Q92519 343 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 RYDENQ9NUL5 291 aaKnown RBP12.02□□□□□ -0.49
COL6A3-203ENST00000353578 CLIC3O95833 236 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 BCHEP06276 602 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 AKR1C4P17516 323 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 AQP2P41181 271 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 FCN2Q15485 313 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 EEF1AKMT2Q5JPI9 291 aaKnown RBP12.02□□□□□ -0.49
COL6A3-203ENST00000353578 BAGE3Q86Y29 109 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 BAGE2Q86Y30 109 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 CADM3Q8N126 398 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 ZNF461Q8TAF7 563 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 DUSP19Q8WTR2 217 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 BMFQ96LC9 184 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 FERD3LQ96RJ6 166 aa12.02□□□□□ -0.49
COL6A3-203ENST00000353578 ATF5Q9Y2D1 282 aaPredicted RBP12.02□□□□□ -0.49
COL6A3-203ENST00000353578 CPT2P23786 658 aa12.01□□□□□ -0.49
COL6A3-203ENST00000353578 PRKCZQ05513 592 aa12.01□□□□□ -0.49
COL6A3-203ENST00000353578 GPR68Q15743 365 aa12.01□□□□□ -0.49
COL6A3-203ENST00000353578 FAM58AQ8N1B3 248 aa12.01□□□□□ -0.49
COL6A3-203ENST00000353578 ISYNA1Q9NPH2 558 aa12.01□□□□□ -0.49
COL6A3-203ENST00000353578 UBR1Q8IWV7 1749 aa12.01□□□□□ -0.49
COL6A3-203ENST00000353578 DOCK9Q9BZ29 2069 aa12.01□□□□□ -0.49
COL6A3-203ENST00000353578 FAM166BA8MTA8 275 aa12.01□□□□□ -0.49
COL6A3-203ENST00000353578 PYCR1P32322 319 aa12.01□□□□□ -0.49
COL6A3-203ENST00000353578 KCNC1P48547 511 aa12.01□□□□□ -0.49
COL6A3-203ENST00000353578 RDH14Q9HBH5 336 aa12.01□□□□□ -0.49
COL6A3-203ENST00000353578 IL17RBQ9NRM6 502 aa12.01□□□□□ -0.49
COL6A3-203ENST00000353578 EEF1E1-BLOC1S5C9J1V9 151 aa12.01□□□□□ -0.49
COL6A3-203ENST00000353578 GNRHRP30968 328 aa12.01□□□□□ -0.49
COL6A3-203ENST00000353578 RPS13P62277 151 aaKnown RBP12.01□□□□□ -0.49
COL6A3-203ENST00000353578 CEACAM7Q14002 265 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms