RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 UXS1Q8NBZ7 420 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 ADAMTS19Q8TE59 1207 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 SPRYD4Q8WW59 207 aaPredicted RBP6.4□□□□□ -1.39
VPS39-202ENST00000348544 ADAMTS14Q8WXS8 1223 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 ACOT12Q8WYK0 555 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 SMG7Q92540 1137 aaKnown RBP6.4□□□□□ -1.39
VPS39-202ENST00000348544 YIPF5Q969M3 257 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 MED8Q96G25 268 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 C12orf66Q96MD2 445 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 SFXN2Q96NB2 322 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 SLC38A2Q96QD8 506 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 DMRTA2Q96SC8 542 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 CACNG6Q9BXT2 260 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 ZNF436Q9C0F3 470 aaPredicted RBP6.4□□□□□ -1.39
VPS39-202ENST00000348544 SMG9Q9H0W8 520 aaKnown RBP6.4□□□□□ -1.39
VPS39-202ENST00000348544 ZCCHC4Q9H5U6 513 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 GKN1Q9NS71 199 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 FAM8A1Q9UBU6 413 aa6.4□□□□□ -1.39
VPS39-202ENST00000348544 SIRT4Q9Y6E7 314 aaPredicted RBP6.4□□□□□ -1.39
VPS39-202ENST00000348544 IGLV3-16A0A075B6K0 115 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 A0A1W2PRB8 838 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 POM121CA8CG34 1229 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 KDM4EB2RXH2 506 aaPredicted RBP6.39□□□□□ -1.39
VPS39-202ENST00000348544 M0R3H8 397 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 SSNA1O43805 119 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 B4GALT2O60909 372 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 KCNJ13O60928 360 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 MTX2O75431 263 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 NTN1O95631 604 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 NFATC1O95644 943 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 H2AFB2P0C5Z0 115 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 NPR2P20594 1047 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 SHC1P29353 583 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 LCN1P31025 176 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 CORO1AP31146 461 aaKnown RBP6.39□□□□□ -1.39
VPS39-202ENST00000348544 MMP12P39900 470 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 KCNJ5P48544 419 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 TAS2R50P59544 299 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 SIM1P81133 766 aaPredicted RBP6.39□□□□□ -1.39
VPS39-202ENST00000348544 DGCR2P98153 550 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 E2F1Q01094 437 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 TLE2Q04725 743 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 MAP4K2Q12851 820 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 SP140Q13342 867 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 FAM71E1Q6IPT2 247 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 KIAA1211LQ6NV74 962 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 Q6ZTK2 550 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 CHST9Q7L1S5 443 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 OLIG3Q7RTU3 272 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 PLEKHH3Q7Z736 793 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 KLBQ86Z14 1044 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 POGLUT1Q8NBL1 392 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 MORN4Q8NDC4 146 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 WFDC5Q8TCV5 224 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 C16orf78Q8WTQ4 265 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 FOPNLQ96NB1 174 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 TEFMQ96QE5 360 aaKnown RBP6.39□□□□□ -1.39
VPS39-202ENST00000348544 ADAM2Q99965 735 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 PRM3Q9NNZ6 103 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 SLAMF7Q9NQ25 335 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 ASB6Q9NWX5 421 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 ING1Q9UK53 422 aaPredicted RBP6.39□□□□□ -1.39
VPS39-202ENST00000348544 SH2B3Q9UQQ2 575 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 RASD1Q9Y272 281 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 SLC9A8Q9Y2E8 581 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 PRG3Q9Y2Y8 225 aaPredicted RBP6.39□□□□□ -1.39
VPS39-202ENST00000348544 ZNF175Q9Y473 711 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 A0A0G2JK05 382 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 MYADML2A6NDP7 307 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 TMEM202A6NGA9 273 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 FAM170BA6NMN3 283 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 ANHXE9PGG2 379 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 SLC16A5O15375 505 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 STC2O76061 302 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 MT-ND4P03905 459 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 WNT1P04628 370 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 DRD5P21918 477 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 CBX5P45973 191 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 BLVRAP53004 296 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 AP1S1P61966 158 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 TSPAN5P62079 268 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 GRIN2CQ14957 1233 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 ETFDHQ16134 617 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 CTXN3Q4LDR2 81 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 TCTE1Q5JU00 501 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 ENTPD8Q5MY95 495 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 SFRP5Q5T4F7 317 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 GDF6Q6KF10 455 aaPredicted RBP6.39□□□□□ -1.39
VPS39-202ENST00000348544 AGTRAPQ6RW13 159 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 SMARCD3Q6STE5 483 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 CRTC1Q6UUV9 634 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 RSPO2Q6UXX9 243 aaPredicted RBP6.39□□□□□ -1.39
VPS39-202ENST00000348544 DGLUCYQ7Z3D6 616 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 FGD2Q7Z6J4 655 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 HMGN2P46Q86SG4 172 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 MRGPREQ86SM8 312 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 CBARPQ8N350 705 aaPredicted RBP6.39□□□□□ -1.39
VPS39-202ENST00000348544 LMNTD1Q8N9Z9 388 aa6.39□□□□□ -1.39
VPS39-202ENST00000348544 FBXO15Q8NCQ5 510 aaPredicted RBP6.39□□□□□ -1.39
VPS39-202ENST00000348544 OR51Q1Q8NH59 317 aa6.39□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms