RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 OR52N2Q8NGI0 321 aa20.48■□□□□ 0.87
SDC3-202ENST00000339394 PIK3R3Q92569 461 aa20.48■□□□□ 0.87
SDC3-202ENST00000339394 ROPN1LQ96C74 230 aa20.48■□□□□ 0.87
SDC3-202ENST00000339394 HSPBAP1Q96EW2 488 aa20.48■□□□□ 0.87
SDC3-202ENST00000339394 SLC35A4Q96G79 324 aa20.48■□□□□ 0.87
SDC3-202ENST00000339394 OR7D2Q96RA2 312 aa20.48■□□□□ 0.87
SDC3-202ENST00000339394 STACQ99469 402 aa20.48■□□□□ 0.87
SDC3-202ENST00000339394 OR51I1Q9H343 314 aa20.48■□□□□ 0.87
SDC3-202ENST00000339394 PIGUQ9H490 435 aa20.48■□□□□ 0.87
SDC3-202ENST00000339394 ZBTB20Q9HC78 741 aaPredicted RBP20.48■□□□□ 0.87
SDC3-202ENST00000339394 Q9N2J8 555 aa20.48■□□□□ 0.87
SDC3-202ENST00000339394 DUSP22Q9NRW4 184 aa20.48■□□□□ 0.87
SDC3-202ENST00000339394 GIN1Q9NXP7 522 aa20.48■□□□□ 0.87
SDC3-202ENST00000339394 PCDHGA9Q9Y5G4 932 aaKnown RBP20.48■□□□□ 0.87
SDC3-202ENST00000339394 PKD1L2Q7Z442 2459 aa20.48■□□□□ 0.87
SDC3-202ENST00000339394 TO15178 435 aa20.47■□□□□ 0.87
SDC3-202ENST00000339394 ACOX3O15254 700 aa20.47■□□□□ 0.87
SDC3-202ENST00000339394 NRG3P56975 720 aa20.47■□□□□ 0.87
SDC3-202ENST00000339394 LINC00303Q3SY05 128 aa20.47■□□□□ 0.87
SDC3-202ENST00000339394 NANOGP8Q6NSW7 305 aa20.47■□□□□ 0.87
SDC3-202ENST00000339394 BEST3Q8N1M1 668 aa20.47■□□□□ 0.87
SDC3-202ENST00000339394 HORMAD2Q8N7B1 307 aa20.47■□□□□ 0.87
SDC3-202ENST00000339394 LMF1Q96S06 567 aa20.47■□□□□ 0.87
SDC3-202ENST00000339394 SMAD5Q99717 465 aaKnown RBP20.47■□□□□ 0.87
SDC3-202ENST00000339394 CPPED1Q9BRF8 314 aaPredicted RBP20.47■□□□□ 0.87
SDC3-202ENST00000339394 NANOGQ9H9S0 305 aa20.47■□□□□ 0.87
SDC3-202ENST00000339394 OR10H1Q9Y4A9 318 aa20.47■□□□□ 0.87
SDC3-202ENST00000339394 KCNE3Q9Y6H6 103 aa20.47■□□□□ 0.87
SDC3-202ENST00000339394 DUXAA6NLW8 204 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 MKRN2OSH3BPM6 223 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 UBOX5O94941 541 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 ALPPP05187 535 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 OR12D1P0DN82 309 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 PPIBP23284 216 aaKnown RBP20.46■□□□□ 0.87
SDC3-202ENST00000339394 ABCD3P28288 659 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 CRATP43155 626 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 SSR4P51571 173 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 MTPNP58546 118 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 MFAP5Q13361 173 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 SELPLGQ14242 412 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 RGNQ15493 299 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 SLC15A4Q8N697 577 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 SLC22A8Q8TCC7 542 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 CDS1Q92903 461 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 THUMPD3Q9BV44 507 aaKnown RBP20.46■□□□□ 0.87
SDC3-202ENST00000339394 CBLCQ9ULV8 474 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 USP24Q9UPU5 2620 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 ITPR1Q14643 2758 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 GXYLT2A0PJZ3 443 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 EVPLLA8MZ36 301 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 HMGN4O00479 90 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 SOX30O94993 753 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 ETFAP13804 333 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 CALB2P22676 271 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 TRHRP34981 398 aaPredicted RBP20.46■□□□□ 0.87
SDC3-202ENST00000339394 KHKP50053 298 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 MNAT1P51948 309 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 CYP27C1Q4G0S4 372 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 ZNF468Q5VIY5 522 aaPredicted RBP20.46■□□□□ 0.87
SDC3-202ENST00000339394 C6orf89Q6UWU4 347 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 HACD2Q6Y1H2 254 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 PRR22Q8IZ63 422 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 C10orf111Q8N326 155 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 TMEM156Q8N614 296 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 COX18Q8N8Q8 333 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 FBXO27Q8NI29 283 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 XAGE5Q8WWM1 108 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 RAB8BQ92930 207 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 TMBIM1Q969X1 311 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 ABHD17AQ96GS6 310 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 GPATCH1Q9BRR8 931 aaKnown RBP20.46■□□□□ 0.87
SDC3-202ENST00000339394 ANKRD10Q9NXR5 420 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 ZKSCAN7Q9P0L1 754 aaPredicted RBP20.46■□□□□ 0.87
SDC3-202ENST00000339394 ABI3Q9P2A4 366 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 NPFFR2Q9Y5X5 522 aa20.46■□□□□ 0.87
SDC3-202ENST00000339394 ASNA1O43681 348 aa20.45■□□□□ 0.86
SDC3-202ENST00000339394 OR6B1O95007 311 aa20.45■□□□□ 0.86
SDC3-202ENST00000339394 WDPCPO95876 746 aa20.45■□□□□ 0.86
SDC3-202ENST00000339394 GPX2P18283 190 aa20.45■□□□□ 0.86
SDC3-202ENST00000339394 SLC6A2P23975 617 aa20.45■□□□□ 0.86
SDC3-202ENST00000339394 PIGAP37287 484 aa20.45■□□□□ 0.86
SDC3-202ENST00000339394 SOX3P41225 446 aa20.45■□□□□ 0.86
SDC3-202ENST00000339394 MAGEA8P43361 318 aa20.45■□□□□ 0.86
SDC3-202ENST00000339394 FADDQ13158 208 aa20.45■□□□□ 0.86
SDC3-202ENST00000339394 RABL3Q5HYI8 236 aa20.45■□□□□ 0.86
SDC3-202ENST00000339394 C8orf82Q6P1X6 216 aaPredicted RBP20.45■□□□□ 0.86
SDC3-202ENST00000339394 IGFL2Q6UWQ7 119 aa20.45■□□□□ 0.86
SDC3-202ENST00000339394 LYPD8Q6UX82 237 aa20.45■□□□□ 0.86
SDC3-202ENST00000339394 OR8J3Q8NGG0 315 aa20.45■□□□□ 0.86
SDC3-202ENST00000339394 ASB15Q8WXK1 588 aa20.45■□□□□ 0.86
SDC3-202ENST00000339394 RMND5BQ96G75 393 aaPredicted RBP20.45■□□□□ 0.86
SDC3-202ENST00000339394 HOPXQ9BPY8 73 aaPredicted RBP20.45■□□□□ 0.86
SDC3-202ENST00000339394 ARHGAP9Q9BRR9 750 aa20.45■□□□□ 0.86
SDC3-202ENST00000339394 RAD21L1Q9H4I0 556 aa20.45■□□□□ 0.86
SDC3-202ENST00000339394 PLA2G3Q9NZ20 509 aa20.45■□□□□ 0.86
SDC3-202ENST00000339394 CORO2BQ9UQ03 480 aa20.45■□□□□ 0.86
SDC3-202ENST00000339394 PCDHGB3Q9Y5G1 929 aa20.45■□□□□ 0.86
SDC3-202ENST00000339394 A8MVJ9 347 aa20.44■□□□□ 0.86
SDC3-202ENST00000339394 F10P00742 488 aa20.44■□□□□ 0.86
SDC3-202ENST00000339394 FAM87AP0C7U9 286 aa20.44■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms