RNA–Protein interactions for RNA: ENST00000338963.6

NEDD4-201, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 1 (best) BASIC

Gene NEDD4, Length 7,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-201ENST00000338963 ZCCHC12Q6PEW1 402 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 SLC35D2Q76EJ3 337 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 TAF8Q7Z7C8 310 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 IGDCC3Q8IVU1 814 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 LAX1Q8IWV1 398 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 GPR65Q8IYL9 337 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 AQP11Q8NBQ7 271 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 BPIFA2Q96DR5 249 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 ZNF419Q96HQ0 510 aaPredicted RBP3.94□□□□□ -1.78
NEDD4-201ENST00000338963 SLC22A12Q96S37 553 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 SORBS1Q9BX66 1292 aaKnown RBP3.94□□□□□ -1.78
NEDD4-201ENST00000338963 ATXN3LQ9H3M9 355 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 NDRG2Q9UN36 371 aaKnown RBP3.94□□□□□ -1.78
NEDD4-201ENST00000338963 PKP3Q9Y446 797 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 FXYD6-FXYD2A0A087WZ82 144 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 KDM4FA0A1W2PPD8 638 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 C20orf202A1L168 122 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 OR6C68A6NDL8 312 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 GGT3PA6NGU5 568 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 UPK1AO00322 258 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 OR7A17O14581 309 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 TP53I11O14683 189 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 MATN3O15232 486 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 HKR1P10072 659 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 PITPNBP48739 271 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 HOXC5Q00444 222 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 EML3Q32P44 896 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 FAM74A1Q5RGS3 127 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 MANEAQ5SRI9 462 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 C10orf91Q5T1B1 145 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 RNF219Q5W0B1 726 aaPredicted RBP3.94□□□□□ -1.78
NEDD4-201ENST00000338963 NAPEPLDQ6IQ20 393 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 VWA1Q6PCB0 445 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 KANSL1Q7Z3B3 1105 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 GTPBP8Q8N3Z3 284 aaPredicted RBP3.94□□□□□ -1.78
NEDD4-201ENST00000338963 TMEM104Q8NE00 496 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 ATP6V1C2Q8NEY4 427 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 PNPLA2Q96AD5 504 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 SGCZQ96LD1 299 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 ZNF670Q9BS34 389 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 FXYD6Q9H0Q3 95 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 DUSP15Q9H1R2 295 aaPredicted RBP3.94□□□□□ -1.78
NEDD4-201ENST00000338963 AIG1Q9NVV5 245 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 SOHLH2Q9NX45 425 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 MGAT4CQ9UBM8 478 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 FKBPLQ9UIM3 349 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 BCS1LQ9Y276 419 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 CPED1A4D0V7 1026 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 UNC119BA6NIH7 251 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 ATP5J2-PTCD1G3V325 749 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 LGALS8O00214 317 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 CACNG3O60359 315 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 ZNF35P13682 527 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 NT5EP21589 574 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 EPHA1P21709 976 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 CD68P34810 354 aaPredicted RBP3.94□□□□□ -1.78
NEDD4-201ENST00000338963 NNMTP40261 264 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 PPT1P50897 306 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 PRRX1P54821 245 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 CACNB1Q02641 598 aaPredicted RBP3.94□□□□□ -1.78
NEDD4-201ENST00000338963 SRSF5Q13243 272 aaKnown RBP3.94□□□□□ -1.78
NEDD4-201ENST00000338963 SURF1Q15526 300 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 ATP6V1FQ16864 119 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 DCAF10Q5QP82 559 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 C1orf185Q5T7R7 199 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 BTNL3Q6UXE8 466 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 CASP12Q6UXS9 341 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 ZNF730Q6ZMV8 503 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 CBARPQ8N350 705 aaPredicted RBP3.94□□□□□ -1.78
NEDD4-201ENST00000338963 ARRDC1Q8N5I2 433 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 OR5W2Q8NH69 310 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 GNPDA2Q8TDQ7 276 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 C14orf79Q96F83 325 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 WBP1Q96G27 269 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 PYURFQ96I23 114 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 HSPA12BQ96MM6 686 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 GPR22Q99680 433 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 CBWD1Q9BRT8 395 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 CLMPQ9H6B4 373 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 SLC6A13Q9NSD5 602 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 C1orf109Q9NX04 203 aa3.94□□□□□ -1.78
NEDD4-201ENST00000338963 ELOA3DA6NLF2 546 aaPredicted RBP3.93□□□□□ -1.78
NEDD4-201ENST00000338963 CDRT15L2A8MXV6 281 aa3.93□□□□□ -1.78
NEDD4-201ENST00000338963 HMGB3O15347 200 aaKnown RBP3.93□□□□□ -1.78
NEDD4-201ENST00000338963 BCL2L11O43521 198 aa3.93□□□□□ -1.78
NEDD4-201ENST00000338963 RGS14O43566 566 aa3.93□□□□□ -1.78
NEDD4-201ENST00000338963 STK16O75716 305 aa3.93□□□□□ -1.78
NEDD4-201ENST00000338963 GOSR1O95249 250 aa3.93□□□□□ -1.78
NEDD4-201ENST00000338963 MAKP20794 623 aa3.93□□□□□ -1.78
NEDD4-201ENST00000338963 HRH2P25021 359 aa3.93□□□□□ -1.78
NEDD4-201ENST00000338963 ARL4AP40617 200 aa3.93□□□□□ -1.78
NEDD4-201ENST00000338963 TM4SF4P48230 202 aa3.93□□□□□ -1.78
NEDD4-201ENST00000338963 EVX1P49640 407 aa3.93□□□□□ -1.78
NEDD4-201ENST00000338963 CCR6P51684 374 aa3.93□□□□□ -1.78
NEDD4-201ENST00000338963 RPS20P60866 119 aaKnown RBP3.93□□□□□ -1.78
NEDD4-201ENST00000338963 SEMG2Q02383 582 aa3.93□□□□□ -1.78
NEDD4-201ENST00000338963 ITKQ08881 620 aa3.93□□□□□ -1.78
NEDD4-201ENST00000338963 PJVKQ0ZLH3 352 aa3.93□□□□□ -1.78
NEDD4-201ENST00000338963 SLC10A1Q14973 349 aa3.93□□□□□ -1.78
NEDD4-201ENST00000338963 PCGF3Q3KNV8 242 aa3.93□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms