RNA–Protein interactions for RNA: ENST00000338045.7

LIMS1-202, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,876 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-202ENST00000338045 PINK1Q9BXM7 581 aa14.41□□□□□ -0.1
LIMS1-202ENST00000338045 TMEFF2Q9UIK5 374 aaPredicted RBP14.41□□□□□ -0.1
LIMS1-202ENST00000338045 KCND3Q9UK17 655 aa14.41□□□□□ -0.1
LIMS1-202ENST00000338045 CCDC88CQ9P219 2028 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 MAGEA13PA6NCF6 341 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 H0YAE9 185 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 SYT5O00445 386 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 FLRT2O43155 660 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 FCMRO60667 390 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 EPPINO95925 133 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 LGI1O95970 557 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 AK1P00568 194 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 PABPC4LP0CB38 370 aaKnown RBP14.4□□□□□ -0.1
LIMS1-202ENST00000338045 ACP1P24666 158 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 CAPGP40121 348 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 PEX19P40855 299 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 NUBP1P53384 320 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 ADARB1P78563 741 aaKnown RBP14.4□□□□□ -0.1
LIMS1-202ENST00000338045 HPCAP84074 193 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 ZFP36L1Q07352 338 aaKnown RBP14.4□□□□□ -0.1
LIMS1-202ENST00000338045 TRA2AQ13595 282 aaKnown RBP eCLIP14.4□□□□□ -0.1
LIMS1-202ENST00000338045 GK3PQ14409 553 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 ARHGAP40Q5TG30 622 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 TYW3Q6IPR3 259 aaKnown RBP14.4□□□□□ -0.1
LIMS1-202ENST00000338045 COMTD1Q86VU5 262 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 DHRSXQ8N5I4 330 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 OR4C15Q8NGM1 316 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 PTCHD1Q96NR3 888 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 ZNF350Q9GZX5 532 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 SAP130Q9H0E3 1048 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 MTHFD2LQ9H903 347 aaPredicted RBP14.4□□□□□ -0.1
LIMS1-202ENST00000338045 C11orf16Q9NQ32 467 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 RARRES3Q9UL19 164 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 COL5A1P20908 1838 aaPredicted RBP14.4□□□□□ -0.1
LIMS1-202ENST00000338045 J3KTA2 159 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 HRKO00198 91 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 SEMA7AO75326 666 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 LDOC1O95751 146 aaPredicted RBP14.4□□□□□ -0.1
LIMS1-202ENST00000338045 LYNP07948 512 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 RORAP35398 523 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 LIMS1P48059 325 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 RHAGQ02094 409 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 EPS8Q12929 822 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 C1orf189Q5VU69 101 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 ANKRD34AQ69YU3 496 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 LAIR1Q6GTX8 287 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 TCTN3Q6NUS6 607 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 PRR23CQ6ZRP0 262 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 COX15Q7KZN9 410 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 LSM14AQ8ND56 463 aaKnown RBP14.4□□□□□ -0.1
LIMS1-202ENST00000338045 OR4D11Q8NGI4 311 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 ZG16BQ96DA0 208 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 VSTM2LQ96N03 204 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 YIPF2Q9BWQ6 316 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 QRSL1Q9H0R6 528 aaKnown RBP14.4□□□□□ -0.1
LIMS1-202ENST00000338045 MKKSQ9NPJ1 570 aaPredicted RBP14.4□□□□□ -0.1
LIMS1-202ENST00000338045 ACER3Q9NUN7 267 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 HCN4Q9Y3Q4 1203 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 FAM32AQ9Y421 112 aaKnown RBP14.4□□□□□ -0.1
LIMS1-202ENST00000338045 WDR45Q9Y484 360 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 TESMINQ9Y4I5 508 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 PCDHGB5Q9Y5G0 923 aa14.4□□□□□ -0.1
LIMS1-202ENST00000338045 HEMK1Q9Y5R4 338 aaPredicted RBP14.4□□□□□ -0.1
LIMS1-202ENST00000338045 FER1L5A0AVI2 2057 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 GPR179Q6PRD1 2367 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 IGLV3-12A0A075B6K2 115 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 TNFRSF11BO00300 401 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 FFAR1O14842 300 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 PRAMEF2O60811 474 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 TIAF1O95411 115 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 ONECUT2O95948 504 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 ALPPP05187 535 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 UBTFL6P0CB48 400 aaPredicted RBP14.39□□□□□ -0.11
LIMS1-202ENST00000338045 MYF6P23409 242 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 PRKAR1BP31321 381 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 SSTR4P31391 388 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 YAP1P46937 504 aaKnown RBP14.39□□□□□ -0.11
LIMS1-202ENST00000338045 CHN2P52757 468 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 EFNA3P52797 238 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 PSG6Q00889 435 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 SPIBQ01892 262 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 ZNF267Q14586 743 aaPredicted RBP14.39□□□□□ -0.11
LIMS1-202ENST00000338045 LAPTM4AQ15012 233 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 RFX4Q33E94 735 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 DCST2Q5T1A1 773 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 KDM4DQ6B0I6 523 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 FAHD1Q6P587 224 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 DHRS4L2Q6PKH6 230 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 USP51Q70EK9 711 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 CYP4Z1Q86W10 505 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 BPHLQ86WA6 291 aaPredicted RBP14.39□□□□□ -0.11
LIMS1-202ENST00000338045 COX18Q8N8Q8 333 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 DHRS1Q96LJ7 313 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 WFDC6Q9BQY6 131 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 TGIF2Q9GZN2 237 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 FOLH1BQ9HBA9 442 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 SLC22A11Q9NSA0 550 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 PDP1Q9P0J1 537 aaPredicted RBP14.39□□□□□ -0.11
LIMS1-202ENST00000338045 C3orf18Q9UK00 162 aa14.39□□□□□ -0.11
LIMS1-202ENST00000338045 ACAD8Q9UKU7 415 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms