RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 TCEAL4Q96EI5 215 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 SULT4A1Q9BR01 284 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 DNAJB11Q9UBS4 358 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 RHBDD3Q9Y3P4 386 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 ROBO1Q9Y6N7 1651 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 GXYLT2A0PJZ3 443 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 CASC3O15234 703 aaKnown RBP11.99□□□□□ -0.49
SDC3-201ENST00000336798 IFNA1P01562 189 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 CERS1P27544 350 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 PBX2P40425 430 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 TLE3Q04726 772 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 NFATC4Q14934 902 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 PRAMEF8Q5VWM4 474 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 PRAMEF7Q5VXH5 474 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 GSG1LQ6UXU4 331 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 MEX3BQ6ZN04 569 aaKnown RBP11.99□□□□□ -0.49
SDC3-201ENST00000336798 WDR53Q7Z5U6 358 aaPredicted RBP11.99□□□□□ -0.49
SDC3-201ENST00000336798 ZFAND4Q86XD8 727 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 ZNF610Q8N9Z0 462 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 FAM3CQ92520 227 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 ZNF689Q96CS4 500 aaPredicted RBP11.99□□□□□ -0.49
SDC3-201ENST00000336798 MAELQ96JY0 434 aaKnown RBP11.99□□□□□ -0.49
SDC3-201ENST00000336798 DPH1Q9BZG8 443 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 PAK1IP1Q9NWT1 392 aaPredicted RBP11.99□□□□□ -0.49
SDC3-201ENST00000336798 LRFN1Q9P244 771 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 FNIP2Q9P278 1114 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 KLHL21Q9UJP4 597 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 AFDNP55196 1824 aaKnown RBP11.99□□□□□ -0.49
SDC3-201ENST00000336798 MROH2AA6NES4 1674 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 SCAMP2O15127 329 aaKnown RBP11.99□□□□□ -0.49
SDC3-201ENST00000336798 TGM5O43548 720 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 APOC3P02656 99 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 DRD5P21918 477 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 GABRR1P24046 479 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 CLDN2P57739 230 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 SOX4Q06945 474 aaPredicted RBP11.99□□□□□ -0.49
SDC3-201ENST00000336798 UNC50Q53HI1 259 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 C6orf132Q5T0Z8 1188 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 PNPLA1Q8N8W4 532 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 OR52B6Q8NGF0 335 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 ZNF559Q9BR84 538 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 CREBZFQ9NS37 354 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 LOC102723532A0A0G2JNH3 316 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 FUOMA2VDF0 154 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 PIRO00625 290 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 STC2O76061 302 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 GSRP00390 522 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 LCKP06239 509 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 TAS2R38P59533 333 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 RPL26P61254 145 aaKnown RBP11.99□□□□□ -0.49
SDC3-201ENST00000336798 NRMQ8IXM6 262 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 SLC17A9Q9BYT1 436 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 ABRACLQ9P1F3 81 aa11.99□□□□□ -0.49
SDC3-201ENST00000336798 SSX4O60224 188 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 DSC1Q08554 894 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 ZNF852Q6ZMS4 543 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 SLC41A3Q96GZ6 507 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 ZNF681Q96N22 645 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 CDC6Q99741 560 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 SLC7A7Q9UM01 511 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 ANKRD34BA5PLL1 514 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 MYADML2A6NDP7 307 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 ZNF254O75437 659 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 F2P00734 622 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 UCHL1P09936 223 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 MPC1LP0DKB6 136 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 LIPCP11150 499 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 GCH1P30793 250 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 CAV2P51636 162 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 ACTC1P68032 377 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 ACTA1P68133 377 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 OR5M10Q6IEU7 315 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 OR5AK2Q8NH90 309 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 SCRN2Q96FV2 425 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 LIN37Q96GY3 246 aaPredicted RBP11.98□□□□□ -0.49
SDC3-201ENST00000336798 SORBS1Q9BX66 1292 aaKnown RBP11.98□□□□□ -0.49
SDC3-201ENST00000336798 MYNNQ9NPC7 610 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 RPH3ALQ9UNE2 315 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 DCDC2BA2VCK2 349 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 PRICKLE3O43900 615 aaPredicted RBP11.98□□□□□ -0.49
SDC3-201ENST00000336798 NPPAP01160 153 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 NTSR1P30989 418 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 MAGEA6P43360 314 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 ART1P52961 327 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 DNAJB13P59910 316 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 GRIN2CQ14957 1233 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 ATP6AP1Q15904 470 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 C11orf91Q3C1V1 193 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 MARVELD2Q8N4S9 558 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 CYB561A3Q8NBI2 242 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 IL1F10Q8WWZ1 152 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 RAB7BQ96AH8 199 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 SIGLEC10Q96LC7 697 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 RFPL1O75677 317 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 MT-ND2P03891 347 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 DBHP09172 617 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 ENDOUP21128 410 aaKnown RBP11.98□□□□□ -0.49
SDC3-201ENST00000336798 TP53I3Q53FA7 332 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 OR52E8Q6IFG1 317 aa11.98□□□□□ -0.49
SDC3-201ENST00000336798 UNQ6126/PRO20091Q6UXV3 157 aa11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms