RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 TMEM120AQ9BXJ8 343 aa14.63□□□□□ -0.07
CCDC28A-201ENST00000332797 SH2D2AQ9NP31 389 aa14.63□□□□□ -0.07
CCDC28A-201ENST00000332797 AGPAT4Q9NRZ5 378 aa14.63□□□□□ -0.07
CCDC28A-201ENST00000332797 DEPPQ9NTK1 212 aa14.63□□□□□ -0.07
CCDC28A-201ENST00000332797 CHCHD2Q9Y6H1 151 aaPredicted RBP14.63□□□□□ -0.07
CCDC28A-201ENST00000332797 PYCARD-AS1I3L0S3 204 aa14.62□□□□□ -0.07
CCDC28A-201ENST00000332797 REM1O75628 298 aa14.62□□□□□ -0.07
CCDC28A-201ENST00000332797 CRYABP02511 175 aaKnown RBP14.62□□□□□ -0.07
CCDC28A-201ENST00000332797 NAGAP17050 411 aa14.62□□□□□ -0.07
CCDC28A-201ENST00000332797 NCF2P19878 526 aaPredicted RBP14.62□□□□□ -0.07
CCDC28A-201ENST00000332797 IL12BP29460 328 aa14.62□□□□□ -0.07
CCDC28A-201ENST00000332797 PIGAP37287 484 aa14.62□□□□□ -0.07
CCDC28A-201ENST00000332797 RFC3P40938 356 aa14.62□□□□□ -0.07
CCDC28A-201ENST00000332797 POLR2JP52435 117 aaKnown RBP14.62□□□□□ -0.07
CCDC28A-201ENST00000332797 PSPHP78330 225 aa14.62□□□□□ -0.07
CCDC28A-201ENST00000332797 VPS26BQ4G0F5 336 aa14.62□□□□□ -0.07
CCDC28A-201ENST00000332797 MFSD12Q6NUT3 480 aa14.62□□□□□ -0.07
CCDC28A-201ENST00000332797 FBXW8Q8N3Y1 598 aa14.62□□□□□ -0.07
CCDC28A-201ENST00000332797 CDRT4Q8N9R6 151 aa14.62□□□□□ -0.07
CCDC28A-201ENST00000332797 GPR151Q8TDV0 419 aa14.62□□□□□ -0.07
CCDC28A-201ENST00000332797 FAR1Q8WVX9 515 aa14.62□□□□□ -0.07
CCDC28A-201ENST00000332797 JADE3Q92613 823 aa14.62□□□□□ -0.07
CCDC28A-201ENST00000332797 DIO2Q92813 273 aa14.62□□□□□ -0.07
CCDC28A-201ENST00000332797 MIB2Q96AX9 1013 aa14.62□□□□□ -0.07
CCDC28A-201ENST00000332797 MOAP1Q96BY2 351 aa14.62□□□□□ -0.07
CCDC28A-201ENST00000332797 CHMP6Q96FZ7 201 aa14.62□□□□□ -0.07
CCDC28A-201ENST00000332797 C16orf58Q96GQ5 468 aa14.62□□□□□ -0.07
CCDC28A-201ENST00000332797 FRMD6Q96NE9 622 aa14.62□□□□□ -0.07
CCDC28A-201ENST00000332797 YIPF4Q9BSR8 244 aa14.62□□□□□ -0.07
CCDC28A-201ENST00000332797 Q9N2J8 555 aa14.62□□□□□ -0.07
CCDC28A-201ENST00000332797 OLAHQ9NV23 265 aa14.62□□□□□ -0.07
CCDC28A-201ENST00000332797 CBLCQ9ULV8 474 aa14.62□□□□□ -0.07
CCDC28A-201ENST00000332797 EXPH5Q8NEV8 1989 aa14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 RNF103-CHMP3A0A140T963 221 aa14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 ASPDHA6ND91 283 aa14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 TTC36A6NLP5 189 aa14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 HMGN2P05204 90 aaKnown RBP14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 IL6P05231 212 aa14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 ACP2P11117 423 aa14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 CNR1P21554 472 aa14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 GABRA3P34903 492 aa14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 ZFP36L2P47974 494 aaKnown RBP14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 DNASE1L1P49184 302 aa14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 MRPL19P49406 292 aaKnown RBP14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 PRIM2P49643 509 aa14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 RPP38P78345 283 aaKnown RBP14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 GAB1Q13480 694 aa14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 SQLEQ14534 574 aa14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 LASP1Q14847 261 aaKnown RBP14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 TIGD2Q4W5G0 525 aa14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 DESI1Q6ICB0 168 aa14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 CLEC4FQ8N1N0 589 aa14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 OR2M7Q8NG81 312 aa14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 DNAJB8Q8NHS0 232 aa14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 SPPL2AQ8TCT8 520 aa14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 PIK3R3Q92569 461 aa14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 EFHD2Q96C19 240 aaPredicted RBP14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 OTUB1Q96FW1 271 aaPredicted RBP14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 CCDC115Q96NT0 180 aa14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 COL21A1Q96P44 957 aa14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 CNIH4Q9P003 139 aa14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 BTNL2Q9UIR0 455 aa14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 CNOT11Q9UKZ1 510 aaKnown RBP14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 TRIM33Q9UPN9 1127 aa14.61□□□□□ -0.07
CCDC28A-201ENST00000332797 GXYLT2A0PJZ3 443 aa14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 FAM234BA2RU67 622 aa14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 PINLYPA6NC86 204 aa14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 UGT2B11O75310 529 aa14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 ALOX5P09917 674 aa14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 ZNF24P17028 368 aa14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 RFX3P48380 749 aa14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 ATP4BP51164 291 aa14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 ARFIP2P53365 341 aa14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 GYS2P54840 703 aa14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 KCNJ2P63252 427 aa14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 FOXK1P85037 733 aa14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 ALDH6A1Q02252 535 aaKnown RBP14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 DECR1Q16698 335 aa14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 CYP27C1Q4G0S4 372 aa14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 BICRALQ6AI39 1079 aa14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 ZCCHC12Q6PEW1 402 aa14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 BHLHB9Q6PI77 547 aa14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 GK5Q6ZS86 529 aa14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 NUP54Q7Z3B4 507 aa14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 POGLUT1Q8NBL1 392 aa14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 SLC16A11Q8NCK7 471 aa14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 NR4A3Q92570 626 aa14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 HGDQ93099 445 aa14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 RMND5BQ96G75 393 aaPredicted RBP14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 ZNF317Q96PQ6 595 aaPredicted RBP14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 PANX1Q96RD7 426 aa14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 ADOQ96SZ5 270 aa14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 BARD1Q99728 777 aaKnown RBP14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 FAM173AQ9BQD7 235 aa14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 INPP5KQ9BT40 448 aa14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 FAF1Q9UNN5 650 aaPredicted RBP14.6□□□□□ -0.07
CCDC28A-201ENST00000332797 OR6C70A6NIJ9 312 aa14.59□□□□□ -0.07
CCDC28A-201ENST00000332797 TSPAN2O60636 221 aa14.59□□□□□ -0.07
CCDC28A-201ENST00000332797 ABCB7O75027 752 aa14.59□□□□□ -0.07
CCDC28A-201ENST00000332797 NKX2-2O95096 273 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms