RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 HSPB3Q12988 150 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 ZNF154Q13106 437 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 SLC14A1Q13336 389 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 TCTN1Q2MV58 587 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 LIPIQ6XZB0 460 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 TBC1D10CQ8IV04 446 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 LGI2Q8N0V4 545 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 OR10G3Q8NGC4 313 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 OR1L3Q8NH93 324 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 ZNF845Q96IR2 970 aaPredicted RBP7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 CELF6Q96J87 481 aaKnown RBP7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 CSPG4P5Q96PW8 444 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 PANX3Q96QZ0 392 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 ARPC5LQ9BPX5 153 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 ATG101Q9BSB4 218 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 MENTQ9BUN1 341 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 BTBD1Q9H0C5 482 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 GLOD4Q9HC38 313 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 ZNF490Q9ULM2 529 aaPredicted RBP7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 SLC7A11Q9UPY5 501 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 A0A1B0GW15 77 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 K7EQM0 130 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 TRAPPC3O43617 180 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 AK1P00568 194 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 JCHAINP01591 159 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 IL6STP40189 918 aaPredicted RBP7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 SUCLG1P53597 346 aaKnown RBP7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 RAG2P55895 527 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 MYL6P60660 151 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 RAP1AP62834 184 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 TGFBR3Q03167 851 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 PLP2Q04941 152 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 ZNF239Q16600 458 aaKnown RBP7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 ACSM3Q53FZ2 586 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 SHEQ5VZ18 495 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 KCTD11Q693B1 232 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 NADSYN1Q6IA69 706 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 FAM124AQ86V42 546 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 TMEM200AQ86VY9 491 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 LRRN4CLQ8ND94 238 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 RNF128Q8TEB7 428 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 FRS2Q8WU20 508 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 WFIKKN1Q96NZ8 548 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 S1PR3Q99500 378 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 NDC1Q9BTX1 674 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 WDR18Q9BV38 432 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 OR10A5Q9H207 317 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 TLE6Q9H808 572 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 LYRM2Q9NU23 88 aaPredicted RBP7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 ZNF446Q9NWS9 450 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 ASIC5Q9NY37 505 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 NLKQ9UBE8 527 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 FBXO7Q9Y3I1 522 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 PPRC1Q5VV67 1664 aaKnown RBP7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 GLYATL1P3A0A0U1RQE8 302 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 TMEM150CB9EJG8 249 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 DNAJA2O60884 412 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 TRBC1P01850 177 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 EFNA1P20827 205 aaPredicted RBP7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 MUTP22033 750 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 GLRA1P23415 457 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 NUDT6P53370 316 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 UBE2G1P62253 170 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 TMEM62Q0P6H9 643 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 DUOXA2Q1HG44 320 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 ZMAT1Q5H9K5 638 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 GLYATL3Q5SZD4 288 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 SLC6A19Q695T7 634 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 TMEM71Q6P5X7 295 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 UNQ6126/PRO20091Q6UXV3 157 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 FA2HQ7L5A8 372 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 ERMP1Q7Z2K6 904 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 FAM26EQ8N5C1 309 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 TBL1YQ9BQ87 522 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 ST6GALNAC5Q9BVH7 336 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 DUSP16Q9BY84 665 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 BPIFA1Q9NP55 256 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 CDC42BPAQ5VT25 1732 aa7.29□□□□□ -1.24
LIMCH1-201ENST00000313860 KIAA0391O15091 583 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 RHBDL1O75783 438 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 CETPP11597 493 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 ACOT2P49753 483 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 XKP51811 444 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 RAB10P61026 200 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 TUSC3Q13454 348 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 LRRC32Q14392 662 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 SLC14A2Q15849 920 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 CPTPQ5TA50 214 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 SAMD13Q5VXD3 122 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 TMEM205Q6UW68 189 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 IGFN1Q86VF2 1251 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 TMEM18Q96B42 140 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 C19orf43Q9BQ61 176 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 DDX31Q9H8H2 851 aaKnown RBP7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 ZNF160Q9HCG1 818 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 ZNF302Q9NR11 478 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 EVA1BQ9NVM1 165 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 FLRT3Q9NZU0 649 aa7.28□□□□□ -1.24
LIMCH1-201ENST00000313860 MAFBQ9Y5Q3 323 aaPredicted RBP7.28□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 67.4 ms