RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 GBE1Q04446 702 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 RBMS2Q15434 407 aaKnown RBP5□□□□□ -1.61
SCN1A-201ENST00000303395 CRB2Q5IJ48 1285 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 FAHD2BQ6P2I3 314 aaPredicted RBP5□□□□□ -1.61
SCN1A-201ENST00000303395 ZNF765Q7L2R6 523 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 SYNE4Q8N205 404 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 ZNF610Q8N9Z0 462 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 FBXO15Q8NCQ5 510 aaPredicted RBP5□□□□□ -1.61
SCN1A-201ENST00000303395 OR6T1Q8NGN1 323 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 PDXPQ96GD0 296 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 FAHD2AQ96GK7 314 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 COQ10AQ96MF6 247 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 LGMNQ99538 433 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 URM1Q9BTM9 101 aaKnown RBP5□□□□□ -1.61
SCN1A-201ENST00000303395 NUDT9Q9BW91 350 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 AKIP1Q9NQ31 210 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 SLC39A9Q9NUM3 307 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 SEC14L6B5MCN3 397 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 E7EQ34 232 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 ANKRD28O15084 1053 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 FANCGO15287 622 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 PRAMEF11O60813 436 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 ERAL1O75616 437 aaKnown RBP5□□□□□ -1.61
SCN1A-201ENST00000303395 RECQL4O94761 1208 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 CHRNB1P11230 501 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 BCKDHAP12694 445 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 BMP8BP34820 402 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 PXNP49023 591 aaPredicted RBP5□□□□□ -1.61
SCN1A-201ENST00000303395 FABP6P51161 128 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 HTD2P86397 168 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 TLE1Q04724 770 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 MAP2K5Q13163 448 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 SLC10A1Q14973 349 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 PM20D1Q6GTS8 502 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 TRNP1Q6NT89 227 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 LETMD1Q6P1Q0 360 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 TRILQ7L0X0 811 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 BMP8AQ7Z5Y6 402 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 SLC15A4Q8N697 577 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 SAMD12Q8N8I0 201 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 C1orf127Q8N9H9 656 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 SYT14Q8NB59 555 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 ISG20Q96AZ6 181 aaKnown RBP5□□□□□ -1.61
SCN1A-201ENST00000303395 SORT1Q99523 831 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 SYT3Q9BQG1 590 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 EBF4Q9BQW3 602 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 IL37Q9NZH6 218 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 GJD2Q9UKL4 321 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 FER1L5A0AVI2 2057 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 LOC100509620A0A075B734 347 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 IGKV6-21A0A0C4DH24 114 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5□□□□□ -1.61
SCN1A-201ENST00000303395 FAM230AA0A1W2PPH8 454 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 C20orf202A1L168 122 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 GGT3PA6NGU5 568 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 PRSS44E7EML9 344 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 H7C1Q1 480 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 TMEM189-UBE2V1I3L0A0 370 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 SLC35G6P0C7Q6 338 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 HNRNPLP14866 589 aaKnown RBP eCLIP5□□□□□ -1.618e-7■■■□□ 16.4
SCN1A-201ENST00000303395 HDCP19113 662 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 HMGCLP35914 325 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 DOC2AQ14183 400 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 CDONQ4KMG0 1287 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 ELFN2Q5R3F8 820 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 FAM180BQ6P0A1 224 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 FOXRED2Q8IWF2 684 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 FRS2Q8WU20 508 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 CCDC120Q96HB5 630 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 SULT4A1Q9BR01 284 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 GINS3Q9BRX5 216 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 TDRD3Q9H7E2 651 aaKnown RBP5□□□□□ -1.61
SCN1A-201ENST00000303395 DUSP22Q9NRW4 184 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 UFSP2Q9NUQ7 469 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 PCDHB10Q9UN67 800 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 PHF3Q92576 2039 aaKnown RBP5□□□□□ -1.61
SCN1A-201ENST00000303395 A0A1B0GUH1 482 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 FAM221BA6H8Z2 402 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 G3V2L1 256 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 ACOT8O14734 319 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 KHNYNO15037 678 aaKnown RBP5□□□□□ -1.61
SCN1A-201ENST00000303395 GPR137BO60478 399 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 PAGE1O75459 146 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 LRATO95237 230 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 SNAP29O95721 258 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 VIPP01282 170 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 ZP3P21754 424 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 TIA1P31483 386 aaKnown RBP eCLIP5□□□□□ -1.61
SCN1A-201ENST00000303395 MC4RP32245 332 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 RFX2P48378 723 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 MRPS6P82932 125 aaKnown RBP5□□□□□ -1.61
SCN1A-201ENST00000303395 DNASE1L3Q13609 305 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 BATFQ16520 125 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 SLC8B1Q6J4K2 584 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 DPY19L4Q7Z388 723 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 RDH10Q8IZV5 341 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 SYS1Q8N2H4 156 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 SPICQ8N5J4 248 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 CCDC71LQ8N9Z2 235 aa5□□□□□ -1.61
SCN1A-201ENST00000303395 ACOT11Q8WXI4 607 aaPredicted RBP5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms