RNA–Protein interactions for RNA: ENST00000300862.7

HIF3A-204, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene HIF3A, Length 2,551 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-204ENST00000300862 PROKR2Q8NFJ6 384 aa12.12□□□□□ -0.47
HIF3A-204ENST00000300862 OR7G1Q8NGA0 311 aa12.12□□□□□ -0.47
HIF3A-204ENST00000300862 OR8D4Q8NGM9 314 aa12.12□□□□□ -0.47
HIF3A-204ENST00000300862 GATAD2BQ8WXI9 593 aa12.12□□□□□ -0.47
HIF3A-204ENST00000300862 ASB15Q8WXK1 588 aa12.12□□□□□ -0.47
HIF3A-204ENST00000300862 TOR4AQ9NXH8 423 aa12.12□□□□□ -0.47
HIF3A-204ENST00000300862 SEC14L4Q9UDX3 406 aa12.12□□□□□ -0.47
HIF3A-204ENST00000300862 STUB1Q9UNE7 303 aa12.12□□□□□ -0.47
HIF3A-204ENST00000300862 TMA7Q9Y2S6 64 aaKnown RBP12.12□□□□□ -0.47
HIF3A-204ENST00000300862 SPIN1Q9Y657 262 aaPredicted RBP12.12□□□□□ -0.47
HIF3A-204ENST00000300862 SLC31A1O15431 190 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 FCMRO60667 390 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 SLITRK5O94991 958 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 CHRNB1P11230 501 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 RFX2P48378 723 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 ARPC4P59998 168 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 ALDH6A1Q02252 535 aaKnown RBP12.11□□□□□ -0.47
HIF3A-204ENST00000300862 UBE3AQ05086 875 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 C1DQ13901 141 aaKnown RBP12.11□□□□□ -0.47
HIF3A-204ENST00000300862 ZIC1Q15915 447 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 ZNF311Q5JNZ3 666 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 PPP2R2DQ66LE6 453 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 GALNT12Q8IXK2 581 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 SYT14Q8NB59 555 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 KCT2Q8NC54 265 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 OR2L3Q8NG85 312 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 BBS10Q8TAM1 723 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 TM9SF4Q92544 642 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 COL26A1Q96A83 441 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 FAM46AQ96IP4 442 aaKnown RBP12.11□□□□□ -0.47
HIF3A-204ENST00000300862 PRRC1Q96M27 445 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 OR7D2Q96RA2 312 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 TM9SF2Q99805 663 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 POLDIP3Q9BY77 421 aaKnown RBP12.11□□□□□ -0.47
HIF3A-204ENST00000300862 BTBD1Q9H0C5 482 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 TIGARQ9NQ88 270 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 PHPT1Q9NRX4 125 aaPredicted RBP12.11□□□□□ -0.47
HIF3A-204ENST00000300862 NDUFB11Q9NX14 153 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 CRNNQ9UBG3 495 aaPredicted RBP12.11□□□□□ -0.47
HIF3A-204ENST00000300862 RABL2AQ9UBK7 228 aaPredicted RBP12.11□□□□□ -0.47
HIF3A-204ENST00000300862 APOBEC3BQ9UH17 382 aaKnown RBP12.11□□□□□ -0.47
HIF3A-204ENST00000300862 SSR3Q9UNL2 185 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 ENTPD4Q9Y227 616 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 SPTBN5Q9NRC6 3674 aaKnown RBP12.11□□□□□ -0.47
HIF3A-204ENST00000300862 CA3P07451 260 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 TRHRP34981 398 aaPredicted RBP12.11□□□□□ -0.47
HIF3A-204ENST00000300862 TIE1P35590 1138 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 DDOSTP39656 456 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 RNF144AP50876 292 aaPredicted RBP12.11□□□□□ -0.47
HIF3A-204ENST00000300862 RORCP51449 518 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 BTN3A2P78410 334 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 CDK5Q00535 292 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 SGCGQ13326 291 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 TAB1Q15750 504 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 BAK1Q16611 211 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 KIAA1211LQ6NV74 962 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 C1orf94Q6P1W5 598 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 SHISA5Q8N114 240 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 OR4E2Q8NGC2 313 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 OR2L8Q8NGY9 312 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 OR14C36Q8NHC7 312 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 PIK3R3Q92569 461 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 GDF15Q99988 308 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 TMEM246Q9BRR3 403 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 TTYH2Q9BSA4 534 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 CCDC32Q9BV29 185 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 SAP130Q9H0E3 1048 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 RACGAP1Q9H0H5 632 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 POLMQ9NP87 494 aaPredicted RBP12.11□□□□□ -0.47
HIF3A-204ENST00000300862 SEMA4GQ9NTN9 838 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 TXNL4BQ9NX01 149 aaKnown RBP12.11□□□□□ -0.47
HIF3A-204ENST00000300862 PRKAG2Q9UGJ0 569 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 DNMT3AQ9Y6K1 912 aaPredicted RBP12.11□□□□□ -0.47
HIF3A-204ENST00000300862 C2orf16Q68DN1 1984 aa12.11□□□□□ -0.47
HIF3A-204ENST00000300862 A0A1W2PQU0 124 aa12.1□□□□□ -0.47
HIF3A-204ENST00000300862 HYKKA2RU49 373 aa12.1□□□□□ -0.47
HIF3A-204ENST00000300862 FAM170BA6NMN3 283 aa12.1□□□□□ -0.47
HIF3A-204ENST00000300862 ISM1B1AKI9 464 aa12.1□□□□□ -0.47
HIF3A-204ENST00000300862 ZNF670-ZNF695F2Z2N8 137 aa12.1□□□□□ -0.47
HIF3A-204ENST00000300862 RAB36O95755 333 aa12.1□□□□□ -0.47
HIF3A-204ENST00000300862 EML2O95834 649 aa12.1□□□□□ -0.47
HIF3A-204ENST00000300862 ASGR2P07307 311 aa12.1□□□□□ -0.47
HIF3A-204ENST00000300862 CAV3P56539 151 aa12.1□□□□□ -0.47
HIF3A-204ENST00000300862 TRA2BP62995 288 aaKnown RBP12.1□□□□□ -0.47
HIF3A-204ENST00000300862 MLLT11Q13015 90 aaPredicted RBP12.1□□□□□ -0.47
HIF3A-204ENST00000300862 CCDC58Q4VC31 144 aa12.1□□□□□ -0.47
HIF3A-204ENST00000300862 TMEM35AQ53FP2 167 aa12.1□□□□□ -0.47
HIF3A-204ENST00000300862 SNAP47Q5SQN1 464 aa12.1□□□□□ -0.47
HIF3A-204ENST00000300862 C6orf132Q5T0Z8 1188 aa12.1□□□□□ -0.47
HIF3A-204ENST00000300862 TMPRSS11AQ6ZMR5 421 aa12.1□□□□□ -0.47
HIF3A-204ENST00000300862 ZNF517Q6ZMY9 492 aaPredicted RBP12.1□□□□□ -0.47
HIF3A-204ENST00000300862 NUP43Q8NFH3 380 aa12.1□□□□□ -0.47
HIF3A-204ENST00000300862 ARMC5Q96C12 935 aa12.1□□□□□ -0.47
HIF3A-204ENST00000300862 RNFT2Q96EX2 444 aa12.1□□□□□ -0.47
HIF3A-204ENST00000300862 RNF170Q96K19 258 aa12.1□□□□□ -0.47
HIF3A-204ENST00000300862 DEPDC7Q96QD5 511 aa12.1□□□□□ -0.47
HIF3A-204ENST00000300862 NELL2Q99435 816 aa12.1□□□□□ -0.47
HIF3A-204ENST00000300862 KXD1Q9BQD3 176 aa12.1□□□□□ -0.47
HIF3A-204ENST00000300862 PITHD1Q9GZP4 211 aaPredicted RBP12.1□□□□□ -0.47
HIF3A-204ENST00000300862 MKRN2Q9H000 416 aaKnown RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms