RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 RAC2P15153 192 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 ATF4P18848 351 aaPredicted RBP18.17■□□□□ 0.5
UPF1-201ENST00000262803 FAM69BQ5VUD6 431 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 C17orf99Q6UX52 265 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 SAMD12Q8N8I0 201 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 CCDC71LQ8N9Z2 235 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 ECHDC3Q96DC8 303 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 VRK1Q99986 396 aaPredicted RBP18.17■□□□□ 0.5
UPF1-201ENST00000262803 OR2T1O43869 369 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 FMO6PO60774 539 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 SLC9A3P48764 834 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 RPS26P62854 115 aaKnown RBP18.17■□□□□ 0.5
UPF1-201ENST00000262803 VTCN1Q7Z7D3 282 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 CLECL1Q8IZS7 167 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 OR8S1Q8NH09 359 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 C22orf15Q8WYQ4 148 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 SORT1Q99523 831 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 FEVQ99581 238 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 RDH14Q9HBH5 336 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 GALNT10Q86SR1 603 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 C16orf78Q8WTQ4 265 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 PTERQ96BW5 349 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 SECISBP2Q96T21 854 aaKnown RBP18.17■□□□□ 0.5
UPF1-201ENST00000262803 DHRS4Q9BTZ2 278 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 BEX2Q9BXY8 128 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 GSTO2Q9H4Y5 243 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 BEX1Q9HBH7 125 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 ACOT13Q9NPJ3 140 aa18.17■□□□□ 0.5
UPF1-201ENST00000262803 FCER2P06734 321 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 SPHARQ15513 63 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 UGT8Q16880 541 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 C6orf183Q5T699 404 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 CGB2Q6NT52 195 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 HMGN2P46Q86SG4 172 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 OR14L1PQ8NHC6 308 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 ABHD5Q8WTS1 349 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 CHFRQ96EP1 664 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 ZNF701Q9NV72 531 aaPredicted RBP18.16■□□□□ 0.5
UPF1-201ENST00000262803 BTNL2Q9UIR0 455 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 NUP50Q9UKX7 468 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 WDR37Q9Y2I8 494 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 WASH4PA8MWX3 477 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 CSNK2A1P68400 391 aaPredicted RBP18.16■□□□□ 0.5
UPF1-201ENST00000262803 RAB11BQ15907 218 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 RBCK1Q9BYM8 510 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 RANBP3Q9H6Z4 567 aaPredicted RBP18.16■□□□□ 0.5
UPF1-201ENST00000262803 C14orf119Q9NWQ9 140 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 ADAMTS5Q9UNA0 930 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 FBP2O00757 339 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 CASC3O15234 703 aaKnown RBP18.16■□□□□ 0.5
UPF1-201ENST00000262803 YKT6O15498 198 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 TNFSF4P23510 183 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 C1orf61Q13536 156 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 KIAA0907Q7Z7F0 614 aaPredicted RBP18.16■□□□□ 0.5
UPF1-201ENST00000262803 LHFPL3Q86UP9 236 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 TEX26Q8N6G2 289 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 FNDC8Q8TC99 324 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 IRF2BPLQ9H1B7 796 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 MAB21L2Q9Y586 359 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 A8MV72 311 aaPredicted RBP18.16■□□□□ 0.5
UPF1-201ENST00000262803 RTCAO00442 366 aaKnown RBP18.16■□□□□ 0.5
UPF1-201ENST00000262803 ETFAP13804 333 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 ZNF28P17035 718 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 ZNF43P17038 809 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 S100A7P31151 101 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 MAGEA6P43360 314 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 ZNF704Q6ZNC4 412 aaPredicted RBP18.16■□□□□ 0.5
UPF1-201ENST00000262803 CEACAM19Q7Z692 300 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 TSPAN33Q86UF1 283 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 PITX2Q99697 317 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 STUB1Q9UNE7 303 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 SLC35A3Q9Y2D2 325 aa18.16■□□□□ 0.5
UPF1-201ENST00000262803 M0R036 132 aa18.15■□□□□ 0.5
UPF1-201ENST00000262803 KIAA0513O60268 411 aa18.15■□□□□ 0.5
UPF1-201ENST00000262803 PDZD3Q86UT5 571 aa18.15■□□□□ 0.5
UPF1-201ENST00000262803 ZNF611Q8N823 705 aa18.15■□□□□ 0.5
UPF1-201ENST00000262803 ADAMTS16Q8TE57 1224 aa18.15■□□□□ 0.5
UPF1-201ENST00000262803 TRUB1Q8WWH5 349 aaKnown RBP18.15■□□□□ 0.5
UPF1-201ENST00000262803 SLC6A14Q9UN76 642 aa18.15■□□□□ 0.5
UPF1-201ENST00000262803 TRAV6A0A075B6T7 132 aa18.15■□□□□ 0.5
UPF1-201ENST00000262803 MYADML2A6NDP7 307 aa18.15■□□□□ 0.5
UPF1-201ENST00000262803 FGF4P08620 206 aa18.15■□□□□ 0.5
UPF1-201ENST00000262803 S100PP25815 95 aa18.15■□□□□ 0.5
UPF1-201ENST00000262803 PTPRRQ15256 657 aa18.15■□□□□ 0.5
UPF1-201ENST00000262803 CRTC1Q6UUV9 634 aa18.15■□□□□ 0.5
UPF1-201ENST00000262803 TMEM173Q86WV6 379 aaPredicted RBP18.15■□□□□ 0.5
UPF1-201ENST00000262803 OR51A7Q8NH64 312 aa18.15■□□□□ 0.5
UPF1-201ENST00000262803 TRMT2BQ96GJ1 504 aaKnown RBP18.15■□□□□ 0.5
UPF1-201ENST00000262803 CASD1Q96PB1 797 aa18.15■□□□□ 0.5
UPF1-201ENST00000262803 ARMC1Q9NVT9 282 aa18.15■□□□□ 0.5
UPF1-201ENST00000262803 MCTS1Q9ULC4 181 aaKnown RBP18.15■□□□□ 0.5
UPF1-201ENST00000262803 I3L521 148 aa18.15■□□□□ 0.5
UPF1-201ENST00000262803 OTX2P32243 289 aa18.15■□□□□ 0.5
UPF1-201ENST00000262803 PSPHP78330 225 aa18.15■□□□□ 0.5
UPF1-201ENST00000262803 TBRG1Q3YBR2 411 aa18.15■□□□□ 0.5
UPF1-201ENST00000262803 C12orf76Q8N812 135 aaPredicted RBP18.15■□□□□ 0.5
UPF1-201ENST00000262803 SORCS1Q8WY21 1168 aa18.15■□□□□ 0.5
UPF1-201ENST00000262803 TSACCQ96A04 125 aaPredicted RBP18.15■□□□□ 0.5
UPF1-201ENST00000262803 GSKIPQ9P0R6 139 aa18.15■□□□□ 0.5
UPF1-201ENST00000262803 ANKMY1Q9P2S6 941 aa18.15■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms