RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 ACVRL1P37023 503 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 ZP1P60852 638 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 UBE2IP63279 158 aaKnown RBP13.85□□□□□ -0.19
PTPRA-201ENST00000216877 KLHL26Q53HC5 615 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 MAP3K3Q99759 626 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 ZNF251Q9BRH9 671 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 TDP1Q9NUW8 608 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 TMEM30AQ9NV96 361 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 PCDHB11Q9Y5F2 797 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 RAMP2O60895 175 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 FZD7O75084 574 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 ATXN1LP0C7T5 689 aaKnown RBP13.85□□□□□ -0.19
PTPRA-201ENST00000216877 TFPIP10646 304 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 CD9P21926 228 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 OR1E1P30953 314 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 RAD52P43351 418 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 LILRA4P59901 499 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 SLC3A1Q07837 685 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 BOP1Q14137 746 aaKnown RBP13.85□□□□□ -0.19
PTPRA-201ENST00000216877 TRAM2Q15035 370 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 ZNF852Q6ZMS4 543 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 SSX9Q7RTT3 188 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 SYT9Q86SS6 491 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 TNFAIP8L1Q8WVP5 186 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 SMARCD1Q96GM5 515 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 PAPOLGQ9BWT3 736 aaKnown RBP13.85□□□□□ -0.19
PTPRA-201ENST00000216877 TMEM231Q9H6L2 316 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 TMEM185BQ9H7F4 350 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 GPBP1L1Q9HC44 474 aaPredicted RBP13.85□□□□□ -0.19
PTPRA-201ENST00000216877 ASF1BQ9NVP2 202 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 H2AFY2Q9P0M6 372 aaPredicted RBP13.85□□□□□ -0.19
PTPRA-201ENST00000216877 IL20RAQ9UHF4 553 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 LHX6Q9UPM6 363 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 RCE1Q9Y256 329 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 MCRIP1C9JLW8 97 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 OSMP13725 252 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 GPX2P18283 190 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 ANXA7P20073 488 aaKnown RBP13.85□□□□□ -0.19
PTPRA-201ENST00000216877 PRPS1L1P21108 318 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 SUOXP51687 545 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 RAB5BP61020 215 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 GUCA2BQ16661 112 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 SDHAF4Q5VUM1 108 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 FOXJ1Q92949 421 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 HGDQ93099 445 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 GPR20Q99678 358 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 MFFQ9GZY8 342 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 CA10Q9NS85 328 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 DCAF16Q9NXF7 216 aa13.85□□□□□ -0.19
PTPRA-201ENST00000216877 NUMA1Q14980 2115 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 BPTFQ12830 3046 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 A0A1B0GV90 55 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 HEPACAM2A8MVW5 462 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 ZBTB42B2RXF5 422 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 ABCD4O14678 606 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 SOD1P00441 154 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 GMFBP60983 142 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 MLLT1Q03111 559 aaPredicted RBP13.84□□□□□ -0.19
PTPRA-201ENST00000216877 RBM39Q14498 530 aaKnown RBP13.84□□□□□ -0.19
PTPRA-201ENST00000216877 FAM151BQ6UXP7 276 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 LBX2Q6XYB7 198 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 QSOX2Q6ZRP7 698 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 WDSUB1Q8N9V3 476 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 OR56B4Q8NH76 319 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 HSD17B8Q92506 261 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 KAT2AQ92830 837 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 PGAP3Q96FM1 320 aaPredicted RBP13.84□□□□□ -0.19
PTPRA-201ENST00000216877 FAM193BQ96PV7 902 aaPredicted RBP13.84□□□□□ -0.19
PTPRA-201ENST00000216877 DMRTA2Q96SC8 542 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 JAM3Q9BX67 310 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 C20orf85Q9H1P6 137 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 CRTAC1Q9NQ79 661 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 THSD1Q9NS62 852 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 GPN3Q9UHW5 284 aaPredicted RBP13.84□□□□□ -0.19
PTPRA-201ENST00000216877 ASB4Q9Y574 426 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 SIP14410 1827 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 CASC3O15234 703 aaKnown RBP13.84□□□□□ -0.19
PTPRA-201ENST00000216877 ST8SIA5O15466 376 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 RECKO95980 971 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 S100PP25815 95 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 SIM1P81133 766 aaPredicted RBP13.84□□□□□ -0.19
PTPRA-201ENST00000216877 CDK6Q00534 326 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 SOX4Q06945 474 aaPredicted RBP13.84□□□□□ -0.19
PTPRA-201ENST00000216877 CEACAM20Q6UY09 585 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 MAMSTRQ6ZN01 415 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 GEMIN6Q8WXD5 167 aaKnown RBP13.84□□□□□ -0.19
PTPRA-201ENST00000216877 LPPQ93052 612 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 PTDSS2Q9BVG9 487 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 ZNF471Q9BX82 626 aaPredicted RBP13.84□□□□□ -0.19
PTPRA-201ENST00000216877 TTTY10Q9BZA0 68 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 RNF32Q9H0A6 362 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 BTBD1Q9H0C5 482 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 GHRLQ9UBU3 117 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 BTNL2Q9UIR0 455 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 WASH4PA8MWX3 477 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 CA12O43570 354 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 EIF1BO60739 113 aaKnown RBP13.84□□□□□ -0.19
PTPRA-201ENST00000216877 SEMA7AO75326 666 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 HLA-DQB1P01920 261 aa13.84□□□□□ -0.19
PTPRA-201ENST00000216877 WNT1P04628 370 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms