RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 LTC4SQ16873 150 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ENPP7Q6UWV6 458 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 FAM131AQ6UXB0 335 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 SH2D5Q6ZV89 423 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 MRPL10Q7Z7H8 261 aaKnown RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 TMEM130Q8N3G9 435 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 NKAIN3Q8N8D7 197 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 HPSE2Q8WWQ2 592 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 RGMAQ96B86 450 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 DUX5Q96PT3 197 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 PBDC1Q9BVG4 233 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 KCNK12Q9HB15 430 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 INPP5EQ9NRR6 644 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 CTNND2Q9UQB3 1225 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 CPQQ9Y646 472 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 KIF13BQ9NQT8 1826 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 WRNQ14191 1432 aaPredicted RBP eCLIP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 PPIP5K1Q6PFW1 1433 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 TCAF2A6NFQ2 919 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 FAM227AF5H4B4 570 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ADORA1P30542 326 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 PTH2RP49190 550 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 DAP3P51398 398 aaKnown RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 CDKN3Q16667 212 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ACSM3Q53FZ2 586 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF691Q5VV52 312 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 DCAF15Q66K64 600 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 OR8G2PQ6IF36 304 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 TRIM46Q7Z4K8 759 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 BOLLQ8N9W6 283 aaKnown RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 C9orf43Q8TAL5 461 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 MARS2Q96GW9 593 aaKnown RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 S100A13Q99584 98 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 FUNDC2Q9BWH2 189 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 NECTIN3Q9NQS3 549 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 RAB22AQ9UL26 194 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 MYO9AB2RTY4 2548 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 LRIT2A6NDA9 550 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 I6L893 689 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 LRATO95237 230 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 C8orf89P0DMQ9 161 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ARRB2P32121 409 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 RPS8P62241 208 aaKnown RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 SUMO1P63165 101 aaKnown RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 TAF13Q15543 124 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF630Q2M218 657 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 CDNFQ49AH0 187 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 XKR4Q5GH76 650 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 DMRTC1Q5HYR2 192 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 RESP18Q5W5W9 173 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 PPP1R3BQ86XI6 285 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 RNASEH2CQ8TDP1 164 aaKnown RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 RXFP2Q8WXD0 754 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 EAF2Q96CJ1 260 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ISOC1Q96CN7 298 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ARHGAP9Q9BRR9 750 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF2Q9BSG1 426 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 CCNL1Q9UK58 526 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 PCDHB1Q9Y5F3 818 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 A0A0G2JLW4 131 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 A0A1B0GTW7 788 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 M0R2N6 131 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ITM2AO43736 263 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 SEC14L2O76054 403 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ITGA4P13612 1032 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 MGMTP16455 207 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 PTPRAP18433 802 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ZNF200P98182 395 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 EPHA10Q5JZY3 1008 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 FAM109BQ6ICB4 259 aaPredicted RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ACSM5Q6NUN0 579 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 GDPD4Q6W3E5 623 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 IZUMO1Q8IYV9 350 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 PRSS35Q8N3Z0 413 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 OR2A12Q8NGT7 310 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 DUSP26Q9BV47 211 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 JAM3Q9BX67 310 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 POTEKPQ9BYX7 375 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ULBP2Q9BZM5 246 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ZMAT3Q9HA38 289 aaKnown RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 FBXL2Q9UKC9 423 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 A0A1B0GVC2 190 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 CLEC18AA5D8T8 446 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 LEUTXA8MZ59 168 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 UGT2B11O75310 529 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 DEDDO75618 318 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 OR2J2O76002 312 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 SERPINE2P07093 398 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ATXN1LP0C7T5 689 aaKnown RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ZP3P21754 424 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 ERP29P30040 261 aaKnown RBP3.39□□□□□ -1.87
SCN1A-221ENST00000641996 PMELP40967 661 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 CLEC18BQ6UXF7 455 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 CARM1Q86X55 608 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 LIX1Q8N485 282 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 CLEC18CQ8NCF0 446 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 FIBINQ8TAL6 211 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 MS4A3Q96HJ5 214 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 TP53RKQ96S44 253 aa3.39□□□□□ -1.87
SCN1A-221ENST00000641996 CISHQ9NSE2 258 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms