RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 ST8SIA6P61647 398 aa2.37□□□□□ -2.03
CD44-239ENST00000639002 GK2Q14410 553 aaPredicted RBP2.37□□□□□ -2.03
CD44-239ENST00000639002 RPS6KA1Q15418 735 aa2.37□□□□□ -2.03
CD44-239ENST00000639002 MEP1BQ16820 701 aa2.37□□□□□ -2.03
CD44-239ENST00000639002 CCDC158Q5M9N0 1113 aa2.37□□□□□ -2.03
CD44-239ENST00000639002 ZNF691Q5VV52 312 aa2.37□□□□□ -2.03
CD44-239ENST00000639002 KCTD11Q693B1 232 aa2.37□□□□□ -2.03
CD44-239ENST00000639002 CDC42EP5Q6NZY7 148 aa2.37□□□□□ -2.03
CD44-239ENST00000639002 TRPM8Q7Z2W7 1104 aa2.37□□□□□ -2.03
CD44-239ENST00000639002 CADM2Q8N3J6 435 aa2.37□□□□□ -2.03
CD44-239ENST00000639002 KIR2DL5BQ8NHK3 375 aa2.37□□□□□ -2.03
CD44-239ENST00000639002 MARC2Q969Z3 335 aa2.37□□□□□ -2.03
CD44-239ENST00000639002 CCDC114Q96M63 670 aa2.37□□□□□ -2.03
CD44-239ENST00000639002 CTRCQ99895 268 aa2.37□□□□□ -2.03
CD44-239ENST00000639002 CITED2Q99967 270 aaPredicted RBP2.37□□□□□ -2.03
CD44-239ENST00000639002 TSSK1BQ9BXA7 367 aa2.37□□□□□ -2.03
CD44-239ENST00000639002 NTN4Q9HB63 628 aa2.37□□□□□ -2.03
CD44-239ENST00000639002 SLC9A8Q9Y2E8 581 aa2.37□□□□□ -2.03
CD44-239ENST00000639002 IGLV3-16A0A075B6K0 115 aa2.36□□□□□ -2.03
CD44-239ENST00000639002 PDLIM1O00151 329 aa2.36□□□□□ -2.03
CD44-239ENST00000639002 WISP3O95389 354 aaPredicted RBP2.36□□□□□ -2.03
CD44-239ENST00000639002 FCARP24071 287 aa2.36□□□□□ -2.03
CD44-239ENST00000639002 UGT1A3P35503 534 aa2.36□□□□□ -2.03
CD44-239ENST00000639002 HERV-K104P63124 156 aa2.36□□□□□ -2.03
CD44-239ENST00000639002 ORC2Q13416 577 aaPredicted RBP2.36□□□□□ -2.03
CD44-239ENST00000639002 STXBP2Q15833 593 aa2.36□□□□□ -2.03
CD44-239ENST00000639002 ANKRD20A4Q4UJ75 823 aa2.36□□□□□ -2.03
CD44-239ENST00000639002 ANKRD20A8PQ5CZ79 823 aa2.36□□□□□ -2.03
CD44-239ENST00000639002 ANKRD20A2Q5SQ80 823 aa2.36□□□□□ -2.03
CD44-239ENST00000639002 ANKRD20A1Q5TYW2 823 aa2.36□□□□□ -2.03
CD44-239ENST00000639002 ANKRD20A3Q5VUR7 823 aa2.36□□□□□ -2.03
CD44-239ENST00000639002 ASRGL1Q7L266 308 aa2.36□□□□□ -2.03
CD44-239ENST00000639002 TMEM179BQ7Z7N9 219 aa2.36□□□□□ -2.03
CD44-239ENST00000639002 HOOK3Q86VS8 718 aa2.36□□□□□ -2.03
CD44-239ENST00000639002 ERICH1Q86X53 443 aa2.36□□□□□ -2.03
CD44-239ENST00000639002 STHQ8IWL8 128 aa2.36□□□□□ -2.03
CD44-239ENST00000639002 OR10H4Q8NGA5 316 aa2.36□□□□□ -2.03
CD44-239ENST00000639002 P3H4Q92791 437 aa2.36□□□□□ -2.03
CD44-239ENST00000639002 ERP27Q96DN0 273 aa2.36□□□□□ -2.03
CD44-239ENST00000639002 STARD4Q96DR4 205 aa2.36□□□□□ -2.03
CD44-239ENST00000639002 DNAJA3Q96EY1 480 aa2.36□□□□□ -2.03
CD44-239ENST00000639002 C11orf24Q96F05 449 aaPredicted RBP2.36□□□□□ -2.03
CD44-239ENST00000639002 DDX50Q9BQ39 737 aaKnown RBP2.36□□□□□ -2.03
CD44-239ENST00000639002 UTP14AQ9BVJ6 771 aaKnown RBP2.36□□□□□ -2.03
CD44-239ENST00000639002 ALG9Q9H6U8 611 aa2.36□□□□□ -2.03
CD44-239ENST00000639002 PTCH1Q13635 1447 aa2.35□□□□□ -2.03
CD44-239ENST00000639002 EI24O14681 340 aa2.35□□□□□ -2.03
CD44-239ENST00000639002 TIMM44O43615 452 aa2.35□□□□□ -2.03
CD44-239ENST00000639002 CRCPO75575 148 aa2.35□□□□□ -2.03
CD44-239ENST00000639002 ECDO95905 644 aaPredicted RBP2.35□□□□□ -2.03
CD44-239ENST00000639002 GAS8O95995 478 aa2.35□□□□□ -2.03
CD44-239ENST00000639002 HPNP05981 417 aa2.35□□□□□ -2.03
CD44-239ENST00000639002 TOP1P11387 765 aaKnown RBP2.35□□□□□ -2.03
CD44-239ENST00000639002 RPS2P15880 293 aaKnown RBP2.35□□□□□ -2.03
CD44-239ENST00000639002 HNRNPA2B1P22626 353 aaKnown RBP2.35□□□□□ -2.03
CD44-239ENST00000639002 STIP1P31948 543 aaKnown RBP2.35□□□□□ -2.03
CD44-239ENST00000639002 METAP1P53582 386 aa2.35□□□□□ -2.03
CD44-239ENST00000639002 IL18R1Q13478 541 aa2.35□□□□□ -2.03
CD44-239ENST00000639002 SMC1AQ14683 1233 aaKnown RBP2.35□□□□□ -2.03
CD44-239ENST00000639002 EXOSC7Q15024 291 aaKnown RBP2.35□□□□□ -2.03
CD44-239ENST00000639002 MPPED2Q15777 294 aa2.35□□□□□ -2.03
CD44-239ENST00000639002 SHROOM1Q2M3G4 852 aaPredicted RBP2.35□□□□□ -2.03
CD44-239ENST00000639002 ZNF789Q5FWF6 425 aa2.35□□□□□ -2.03
CD44-239ENST00000639002 BBS1Q8NFJ9 593 aa2.35□□□□□ -2.03
CD44-239ENST00000639002 LHX4Q969G2 390 aa2.35□□□□□ -2.03
CD44-239ENST00000639002 TEKT1Q969V4 418 aa2.35□□□□□ -2.03
CD44-239ENST00000639002 ACCSQ96QU6 501 aa2.35□□□□□ -2.03
CD44-239ENST00000639002 NAPBQ9H115 298 aa2.35□□□□□ -2.03
CD44-239ENST00000639002 CARD9Q9H257 536 aa2.35□□□□□ -2.03
CD44-239ENST00000639002 MAGEF1Q9HAY2 307 aa2.35□□□□□ -2.03
CD44-239ENST00000639002 PNPLA3Q9NST1 481 aa2.35□□□□□ -2.03
CD44-239ENST00000639002 C13orf42A0A1B0GVH6 325 aa2.34□□□□□ -2.03
CD44-239ENST00000639002 C11orf98E9PRG8 122 aa2.34□□□□□ -2.03
CD44-239ENST00000639002 DFNA5O60443 496 aa2.34□□□□□ -2.03
CD44-239ENST00000639002 TIMP1P01033 207 aa2.34□□□□□ -2.03
CD44-239ENST00000639002 H2AFZP0C0S5 128 aa2.34□□□□□ -2.03
CD44-239ENST00000639002 GHRP10912 638 aa2.34□□□□□ -2.03
CD44-239ENST00000639002 CYP11B1P15538 503 aa2.34□□□□□ -2.03
CD44-239ENST00000639002 ACVR1BP36896 505 aa2.34□□□□□ -2.03
CD44-239ENST00000639002 ACADSBP45954 432 aa2.34□□□□□ -2.03
CD44-239ENST00000639002 SLC26A2P50443 739 aa2.34□□□□□ -2.03
CD44-239ENST00000639002 GPC3P51654 580 aa2.34□□□□□ -2.03
CD44-239ENST00000639002 GEMP55040 296 aa2.34□□□□□ -2.03
CD44-239ENST00000639002 TLE4Q04727 773 aa2.34□□□□□ -2.03
CD44-239ENST00000639002 DAZ2Q13117 558 aaKnown RBP2.34□□□□□ -2.03
CD44-239ENST00000639002 KBTBD12Q3ZCT8 623 aa2.34□□□□□ -2.03
CD44-239ENST00000639002 LGSNQ5TDP6 509 aa2.34□□□□□ -2.03
CD44-239ENST00000639002 PRR5LQ6MZQ0 368 aa2.34□□□□□ -2.03
CD44-239ENST00000639002 ZNF561Q8N587 486 aa2.34□□□□□ -2.03
CD44-239ENST00000639002 CCDC71LQ8N9Z2 235 aa2.34□□□□□ -2.03
CD44-239ENST00000639002 OR4F17Q8NGA8 305 aa2.34□□□□□ -2.03
CD44-239ENST00000639002 ADAMTS16Q8TE57 1224 aa2.34□□□□□ -2.03
CD44-239ENST00000639002 ZNF721Q8TF20 911 aa2.34□□□□□ -2.03
CD44-239ENST00000639002 RPGRIP1Q96KN7 1286 aa2.34□□□□□ -2.03
CD44-239ENST00000639002 OR4F4Q96R69 305 aa2.34□□□□□ -2.03
CD44-239ENST00000639002 IL4I1Q96RQ9 567 aa2.34□□□□□ -2.03
CD44-239ENST00000639002 OR51J1Q9H342 316 aa2.34□□□□□ -2.03
CD44-239ENST00000639002 NANOGQ9H9S0 305 aa2.34□□□□□ -2.03
CD44-239ENST00000639002 MEPEQ9NQ76 525 aaPredicted RBP2.34□□□□□ -2.03
CD44-239ENST00000639002 DAZ3Q9NR90 486 aaKnown RBP2.34□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms