RNA–Protein interactions for RNA: ENST00000622309.4

VPS11-209, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS11, Length 3,352 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-209ENST00000622309 ECH1Q13011 328 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 PTGR1Q14914 329 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 LY6KQ17RY6 165 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 TMUB2Q71RG4 321 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 PLEKHH3Q7Z736 793 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 CALHM3Q86XJ0 350 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 APOBEC3FQ8IUX4 373 aaKnown RBP7.5□□□□□ -1.21
VPS11-209ENST00000622309 OR52J3Q8NH60 311 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 OR14C36Q8NHC7 312 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 ENKD1Q9H0I2 346 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 XKR8Q9H6D3 395 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 REEP4Q9H6H4 257 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 TMPRSS4Q9NRS4 437 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 GALPQ9UBC7 116 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 MGAT4CQ9UBM8 478 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 TMEM200CA6NKL6 621 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 E9PQ18 207 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 CACNG3O60359 315 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 CDC123O75794 336 aaPredicted RBP7.5□□□□□ -1.21
VPS11-209ENST00000622309 GATBO75879 557 aaKnown RBP7.5□□□□□ -1.21
VPS11-209ENST00000622309 SPDEFO95238 335 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 GJB1P08034 283 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 PIPP12273 146 aaPredicted RBP7.5□□□□□ -1.21
VPS11-209ENST00000622309 CKBP12277 381 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 LCP1P13796 627 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 AHCYP23526 432 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 KDELR2P33947 212 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 MAPK8P45983 427 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 GCGRP47871 477 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 PXNP49023 591 aaPredicted RBP7.5□□□□□ -1.21
VPS11-209ENST00000622309 SRP9P49458 86 aaKnown RBP7.5□□□□□ -1.21
VPS11-209ENST00000622309 RAB4BP61018 213 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 RBBP4Q09028 425 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 PPIGQ13427 754 aaKnown RBP eCLIP7.5□□□□□ -1.21
VPS11-209ENST00000622309 GCNT6Q5T4J0 391 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 MEDAGQ5VYS4 303 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 TMIGD1Q6UXZ0 262 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 SKA3Q8IX90 412 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 TOMM5Q8N4H5 51 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 RTL3Q8N8U3 475 aaKnown RBP7.5□□□□□ -1.21
VPS11-209ENST00000622309 PLA2G15Q8NCC3 412 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 GPR26Q8NDV2 337 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 PROKR2Q8NFJ6 384 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 DMBX1Q8NFW5 382 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 STK35Q8TDR2 534 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 MEGF10Q96KG7 1140 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 OR4K3Q96R72 315 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 NT5C1AQ9BXI3 368 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 ATXN3LQ9H3M9 355 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 SEBOXQ9HB31 216 aaPredicted RBP7.5□□□□□ -1.21
VPS11-209ENST00000622309 TRPV4Q9HBA0 871 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 ZNF302Q9NR11 478 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 CFAP97Q9P2B7 532 aa7.5□□□□□ -1.21
VPS11-209ENST00000622309 LSM2Q9Y333 95 aaKnown RBP7.5□□□□□ -1.21
VPS11-209ENST00000622309 COL11A1P12107 1806 aaPredicted RBP7.49□□□□□ -1.21
VPS11-209ENST00000622309 UBE2CO00762 179 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 TCAPO15273 167 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 TNRC18O15417 2968 aaPredicted RBP7.49□□□□□ -1.21
VPS11-209ENST00000622309 ANXA9O76027 345 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 AKR7A3O95154 331 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 ASGR1P07306 291 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 ODC1P11926 461 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 BPIP17213 487 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 SMPD1P17405 629 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 HOXA6P31267 233 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 CLDN8P56748 225 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 TPI1P60174 286 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 ZP1P60852 638 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 FABP9Q0Z7S8 132 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 ZNF155Q12901 538 aaPredicted RBP7.49□□□□□ -1.21
VPS11-209ENST00000622309 RFTN2Q52LD8 501 aaPredicted RBP7.49□□□□□ -1.21
VPS11-209ENST00000622309 ADGRF1Q5T601 910 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 DHRS7BQ6IAN0 325 aaPredicted RBP7.49□□□□□ -1.21
VPS11-209ENST00000622309 DOK6Q6PKX4 331 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 LYPD4Q6UWN0 246 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 SLITRK4Q8IW52 837 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 DCUN1D3Q8IWE4 304 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 C10orf111Q8N326 155 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 SYNPOQ8N3V7 929 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 NANOGP1Q8N7R0 232 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 RELL2Q8NC24 303 aaPredicted RBP7.49□□□□□ -1.21
VPS11-209ENST00000622309 RNF149Q8NC42 400 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 TMEM185AQ8NFB2 350 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 RHEBL1Q8TAI7 183 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 TRMT10AQ8TBZ6 339 aaKnown RBP7.49□□□□□ -1.21
VPS11-209ENST00000622309 CLEC4CQ8WTT0 213 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 SNX33Q8WV41 574 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 ATF6BQ99941 703 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 CPPED1Q9BRF8 314 aaPredicted RBP7.49□□□□□ -1.21
VPS11-209ENST00000622309 C7orf50Q9BRJ6 194 aaKnown RBP7.49□□□□□ -1.21
VPS11-209ENST00000622309 RNF32Q9H0A6 362 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 MTG2Q9H4K7 406 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 NCOR1P1Q9H4R4 102 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 OPA3Q9H6K4 179 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 NLGN3Q9NZ94 848 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 PPP4R1LQ9P1A2 415 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 PCDHGA1Q9Y5H4 931 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 NPTNQ9Y639 398 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 LRIT2A6NDA9 550 aa7.49□□□□□ -1.21
VPS11-209ENST00000622309 C5orf52A6NGY3 159 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms