RNA–Protein interactions for RNA: ENST00000621271.4

CLTCL1-211, Transcript of clathrin heavy chain like 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLTCL1, Length 5,313 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLTCL1-211ENST00000621271 PRAMEF10O60809 474 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 DCNP07585 359 aaKnown RBP9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 ANXA3P12429 323 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 TIMP2P16035 220 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 CERS1P27544 350 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 TMBIM6P55061 237 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 RACK1P63244 317 aaKnown RBP9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 TUBA1BP68363 451 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 MZT1Q08AG7 82 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 RABL3Q5HYI8 236 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 MEDAGQ5VYS4 303 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 TUBA1AQ71U36 451 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 PRR22Q8IZ63 422 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 VWA5B2Q8N398 1253 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 UCN3Q969E3 161 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 FKBP10Q96AY3 582 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 KATNBL1Q9H079 304 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 ZNF442Q9H7R0 627 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 MTHFD2LQ9H903 347 aaPredicted RBP9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 ZNF701Q9NV72 531 aaPredicted RBP9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 ZNF224Q9NZL3 707 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 DNAJB11Q9UBS4 358 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 PFDN2Q9UHV9 154 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 GLSO94925 669 aaPredicted RBP9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 GNRHRP30968 328 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 AKR1D1P51857 326 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 IST1P53990 364 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 SNU13P55769 128 aaKnown RBP9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 ACTC1P68032 377 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 ACTA1P68133 377 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 PPP1R8Q12972 351 aaKnown RBP9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 TMEM240Q5SV17 173 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 ZNF613Q6PF04 617 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 HMGN2P46Q86SG4 172 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 GALNT6Q8NCL4 622 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 ZUFSPQ96AP4 578 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 S100A16Q96FQ6 103 aaKnown RBP9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 HDHD5Q9BXW7 423 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 CUTCQ9NTM9 273 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 NUP50Q9UKX7 468 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 C4AP0C0L4 1744 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 FOXE1O00358 373 aaPredicted RBP9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 KIAA0355O15063 1070 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 ITGBL1O95965 494 aaPredicted RBP9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 MAGEA8P43361 318 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 RPS26P62854 115 aaKnown RBP9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 CHRNEQ04844 493 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 ZNF423Q2M1K9 1284 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 CHRFAM7AQ494W8 412 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 OGFRL1Q5TC84 451 aaPredicted RBP9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 ARHGAP11AQ6P4F7 1023 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 KRTCAP2Q8N6L1 136 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 DDX51Q8N8A6 666 aaKnown RBP eCLIP9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 ZNF709Q8N972 641 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 RCBTB1Q8NDN9 531 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 SPTSSAQ969W0 71 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 FBXL20Q96IG2 436 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 NSUN5Q96P11 429 aaKnown RBP9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 CDC6Q99741 560 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 FAM117AQ9C073 453 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 ACTR6Q9GZN1 396 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 NUFIP1Q9UHK0 495 aaKnown RBP9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 NXT1Q9UKK6 140 aaKnown RBP9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 PADI1Q9ULC6 663 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 EXOSC1Q9Y3B2 195 aaKnown RBP9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 SCN11AQ9UI33 1791 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 LOC100509620A0A075B734 347 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 DISC1C4P0D8 188 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 ADAM12O43184 909 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 FDXRP22570 491 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 NAA10P41227 235 aaPredicted RBP9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 GCGRP47871 477 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 CCL11P51671 97 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 ARSDP51689 593 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 DIO3P55073 304 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 MLLT10P55197 1068 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 EEF1A1P68104 462 aaKnown RBP9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 TECRLQ5HYJ1 363 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 MARCH8Q5T0T0 291 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 CCSAPQ6IQ19 270 aaPredicted RBP9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 SHQ1Q6PI26 577 aaKnown RBP9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 LCTLQ6UWM7 567 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 MRPL21Q7Z2W9 205 aaKnown RBP9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 FOXRED2Q8IWF2 684 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 NPWQ8N729 165 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 C3orf58Q8NDZ4 430 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 OR9A4Q8NGU2 314 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 OR2T4Q8NH00 348 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 FCRL3Q96P31 734 aaPredicted RBP9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 MS4A4EQ96PG1 132 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 SLC22A4Q9H015 551 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 SOX17Q9H6I2 414 aaPredicted RBP9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 COQ3Q9NZJ6 369 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 GHRLQ9UBU3 117 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 SLC6A14Q9UN76 642 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 PCDHGB6Q9Y5F9 930 aa9.29□□□□□ -0.92
CLTCL1-211ENST00000621271 PTPRZ1P23471 2315 aaPredicted RBP9.28□□□□□ -0.92
CLTCL1-211ENST00000621271 ZNF182P17025 639 aaPredicted RBP9.28□□□□□ -0.92
CLTCL1-211ENST00000621271 RPS3P23396 243 aaKnown RBP eCLIP9.28□□□□□ -0.92
CLTCL1-211ENST00000621271 INHBCP55103 352 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms