RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 HSD3B7Q9H2F3 369 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 RWDD1Q9H446 243 aaPredicted RBP3.98□□□□□ -1.77
LINC00540-201ENST00000611481 CYP3A43Q9HB55 503 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 ZNF160Q9HCG1 818 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 KLHL1Q9NR64 748 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 SLC22A11Q9NSA0 550 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 NINJ2Q9NZG7 142 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 RABL2AQ9UBK7 228 aaPredicted RBP3.98□□□□□ -1.77
LINC00540-201ENST00000611481 EPHA6Q9UF33 1036 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 GNPTGQ9UJJ9 305 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 HAO1Q9UJM8 370 aa3.98□□□□□ -1.77
LINC00540-201ENST00000611481 PCYT1BQ9Y5K3 369 aaPredicted RBP3.98□□□□□ -1.77
LINC00540-201ENST00000611481 LOC102723996A0A087X1L8 192 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 LRRIQ3A6PVS8 624 aaPredicted RBP3.97□□□□□ -1.77
LINC00540-201ENST00000611481 CCDC188H7C350 402 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 TCF21O43680 179 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 MITFO75030 526 aaPredicted RBP3.97□□□□□ -1.77
LINC00540-201ENST00000611481 NDUFS3O75489 264 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 PALMO75781 387 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 SEC31AO94979 1220 aaKnown RBP3.97□□□□□ -1.77
LINC00540-201ENST00000611481 NDUFB8O95169 186 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 SNX4O95219 450 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 ZBTB11O95625 1053 aaPredicted RBP3.97□□□□□ -1.77
LINC00540-201ENST00000611481 IGSF6O95976 241 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 PLAUP00749 431 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 IGKV3-20P01619 116 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 CYP4B1P13584 511 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 OR1E1P30953 314 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 MC5RP33032 325 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 CAMPP49913 170 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 AP3M2P53677 418 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 RAD23BP54727 409 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 KRTAP10-5P60370 271 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 GPR18Q14330 331 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 SLC18A3Q16572 532 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 RBBP7Q16576 425 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 CLEC12BQ2HXU8 276 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 TDRD12Q587J7 1177 aaKnown RBP3.97□□□□□ -1.77
LINC00540-201ENST00000611481 IGSF11Q5DX21 431 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 ZNF789Q5FWF6 425 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 ACSM6Q6P461 480 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 STRADAQ7RTN6 431 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 CNTN4Q8IWV2 1026 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 FBXL14Q8N1E6 418 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 METTL25Q8N6Q8 603 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 SLC4A11Q8NBS3 891 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 OR11G2Q8NGC1 345 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 RASSF8Q8NHQ8 419 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 SLC22A8Q8TCC7 542 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 PSMF1Q92530 271 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 KCNJ9Q92806 393 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 SLCO2A1Q92959 643 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 MMABQ96EY8 250 aaPredicted RBP3.97□□□□□ -1.77
LINC00540-201ENST00000611481 TRMT61AQ96FX7 289 aaKnown RBP3.97□□□□□ -1.77
LINC00540-201ENST00000611481 ZNF396Q96N95 335 aaPredicted RBP3.97□□□□□ -1.77
LINC00540-201ENST00000611481 EGFL8Q99944 293 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 CRACR2AQ9BSW2 395 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 H2AFJQ9BTM1 129 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 TM2D2Q9BX73 214 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 HES7Q9BYE0 225 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 TRIM31Q9BZY9 425 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 RAB33BQ9H082 229 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 ABCG8Q9H221 673 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 HRH4Q9H3N8 390 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 UBTD1Q9HAC8 227 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 POPDC2Q9HBU9 364 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 APOBEC3GQ9HC16 384 aaKnown RBP3.97□□□□□ -1.77
LINC00540-201ENST00000611481 POLE3Q9NRF9 147 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 C20orf141Q9NUB4 165 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 TAS2R14Q9NYV8 317 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 ZNF624Q9P2J8 865 aaPredicted RBP3.97□□□□□ -1.77
LINC00540-201ENST00000611481 CGNQ9P2M7 1197 aaKnown RBP3.97□□□□□ -1.77
LINC00540-201ENST00000611481 ARMCX3Q9UH62 379 aaPredicted RBP3.97□□□□□ -1.77
LINC00540-201ENST00000611481 A4GNTQ9UNA3 340 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 CHKBQ9Y259 395 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 SNX10Q9Y5X0 201 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 PHF3Q92576 2039 aaKnown RBP3.97□□□□□ -1.77
LINC00540-201ENST00000611481 DNAJC13O75165 2243 aa3.97□□□□□ -1.77
LINC00540-201ENST00000611481 DSCAMO60469 2012 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 ILVBLA1L0T0 632 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 TSPAN11A1L157 253 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 SYCE3A1L190 88 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 HTR3EA5X5Y0 456 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 ASPDHA6ND91 283 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 OOEPA6NGQ2 149 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 NPIPB13A6NJU9 1138 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 ANXA2P2A6NMY6 339 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 NPIPB5A8MRT5 1133 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 ZNF814B7Z6K7 855 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 NPIPB4C9JG80 1138 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 E7EQ34 232 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 VEGFDO43915 354 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 GPRIN2O60269 458 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 CDC40O60508 579 aaKnown RBP eCLIP3.96□□□□□ -1.78
LINC00540-201ENST00000611481 TPPPO94811 219 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 IGLV3-25P01717 112 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 HLA-DRAP01903 254 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 OPN1MWP04001 364 aa3.96□□□□□ -1.78
LINC00540-201ENST00000611481 ALDOAP04075 364 aaKnown RBP3.96□□□□□ -1.78
LINC00540-201ENST00000611481 INHBAP08476 426 aa3.96□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms