RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 RNF144AP50876 292 aaPredicted RBP17.29■□□□□ 0.36
UPF1-210ENST00000600689 PCDH1Q08174 1060 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 SAMD12Q8N8I0 201 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 ZNF680Q8NEM1 530 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 OR6T1Q8NGN1 323 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 PIGKQ92643 395 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 HYLS1Q96M11 299 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 ZFP3Q96NJ6 502 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 ENAMQ9NRM1 1142 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 SF3B6Q9Y3B4 125 aaKnown RBP17.29■□□□□ 0.36
UPF1-210ENST00000600689 ALPK3Q96L96 1907 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 TGM5O43548 720 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 KLHL18O94889 574 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 SLC2A10O95528 541 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 TP53P04637 393 aaPredicted RBP17.29■□□□□ 0.36
UPF1-210ENST00000600689 ZBTB37Q5TC79 503 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 RAET1GQ6H3X3 334 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 CHMP1BQ7LBR1 199 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 CAMKMTQ7Z624 323 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 TRAPPC5Q8IUR0 188 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 ZNF655Q8N720 491 aaPredicted RBP17.29■□□□□ 0.36
UPF1-210ENST00000600689 ANKK1Q8NFD2 765 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 TMEM163Q8TC26 289 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 SPRYD4Q8WW59 207 aaPredicted RBP17.29■□□□□ 0.36
UPF1-210ENST00000600689 FCRL4Q96PJ5 515 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 TEFMQ96QE5 360 aaKnown RBP17.29■□□□□ 0.36
UPF1-210ENST00000600689 MRPL15Q9P015 296 aaKnown RBP17.29■□□□□ 0.36
UPF1-210ENST00000600689 KCND3Q9UK17 655 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 ING4Q9UNL4 249 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 CSNK1G3Q9Y6M4 447 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 CDH10Q9Y6N8 788 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 MYO7AQ13402 2215 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 UGDHO60701 494 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 RFPL3O75679 317 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 CD3GP09693 182 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 CSF2RAP15509 400 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 ZNF30P17039 623 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 BMPERQ8N8U9 685 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 SMAP2Q8WU79 429 aaPredicted RBP17.29■□□□□ 0.36
UPF1-210ENST00000600689 KAT2AQ92830 837 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 MS4A3Q96HJ5 214 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 TREX2Q9BQ50 279 aaPredicted RBP17.29■□□□□ 0.36
UPF1-210ENST00000600689 MARVELD1Q9BSK0 173 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 RNF32Q9H0A6 362 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 SPG21Q9NZD8 308 aa17.29■□□□□ 0.36
UPF1-210ENST00000600689 FEZF1A0PJY2 475 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 B8ZZF3 427 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 SLC16A1P53985 500 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 CDH11P55287 796 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 SF3A2Q15428 464 aaKnown RBP17.28■□□□□ 0.36
UPF1-210ENST00000600689 TMEM201Q5SNT2 666 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 C22orf39Q6P5X5 142 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 ZNF783Q6ZMS7 281 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 COMMD7Q86VX2 200 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 KIF18BQ86Y91 864 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 OR11H7Q8NGC8 314 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 TEX47Q8TBZ9 253 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 FAM46AQ96IP4 442 aaKnown RBP17.28■□□□□ 0.36
UPF1-210ENST00000600689 TDP1Q9NUW8 608 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 POLHQ9Y253 713 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 NTNG1Q9Y2I2 539 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 RANBP2P49792 3224 aaKnown RBP17.28■□□□□ 0.36
UPF1-210ENST00000600689 HELZP42694 1942 aaKnown RBP17.28■□□□□ 0.36
UPF1-210ENST00000600689 IGLV3-16A0A075B6K0 115 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 PPM1DO15297 605 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 PROM1O43490 865 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 CHP2O43745 196 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 LGI1O95970 557 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 DRD5P21918 477 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 UQCRC2P22695 453 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 IRS1P35568 1242 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 SOX9P48436 509 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 PER3P56645 1201 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 OR10A3P58181 314 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 VSX2P58304 361 aaPredicted RBP17.28■□□□□ 0.36
UPF1-210ENST00000600689 COX10Q12887 443 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 HIST2H2AA3Q6FI13 130 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 DUSP18Q8NEJ0 188 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 GOT1L1Q8NHS2 421 aaPredicted RBP17.28■□□□□ 0.36
UPF1-210ENST00000600689 C12orf4Q9NQ89 552 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 EIF3KQ9UBQ5 218 aaKnown RBP17.28■□□□□ 0.36
UPF1-210ENST00000600689 TESQ9UGI8 421 aaKnown RBP17.28■□□□□ 0.36
UPF1-210ENST00000600689 TBX21Q9UL17 535 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 A4GNTQ9UNA3 340 aa17.28■□□□□ 0.36
UPF1-210ENST00000600689 CPSF4LA6NMK7 179 aaKnown RBP17.27■□□□□ 0.36
UPF1-210ENST00000600689 A8MVJ9 347 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 SLC16A5O15375 505 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 NUPL2O15504 423 aaKnown RBP17.27■□□□□ 0.36
UPF1-210ENST00000600689 SLC43A1O75387 559 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 OLFM2O95897 454 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 SOD1P00441 154 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 FAM157BP0CG42 384 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 TFPIP10646 304 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 PEPDP12955 493 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 HSD3B1P14060 373 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 HSD3B2P26439 372 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 ADAM15Q13444 863 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 TIGD3Q6B0B8 471 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 FBXL6Q8N531 539 aa17.27■□□□□ 0.36
UPF1-210ENST00000600689 OR8D4Q8NGM9 314 aa17.27■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms