RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 SFXN5Q8TD22 340 aa17.86■□□□□ 0.45
UPF1-209ENST00000600310 HOXB13Q92826 284 aaPredicted RBP17.86■□□□□ 0.45
UPF1-209ENST00000600310 MOAP1Q96BY2 351 aa17.86■□□□□ 0.45
UPF1-209ENST00000600310 GIMAP5Q96F15 307 aa17.86■□□□□ 0.45
UPF1-209ENST00000600310 SIGLEC12Q96PQ1 595 aa17.86■□□□□ 0.45
UPF1-209ENST00000600310 ELAC2Q9BQ52 826 aaKnown RBP17.86■□□□□ 0.45
UPF1-209ENST00000600310 LMF2Q9BU23 707 aaKnown RBP17.86■□□□□ 0.45
UPF1-209ENST00000600310 HPF1Q9NWY4 346 aa17.86■□□□□ 0.45
UPF1-209ENST00000600310 CCDC167Q9P0B6 97 aa17.86■□□□□ 0.45
UPF1-209ENST00000600310 TTC36A6NLP5 189 aa17.85■□□□□ 0.45
UPF1-209ENST00000600310 FBXO45P0C2W1 286 aa17.85■□□□□ 0.45
UPF1-209ENST00000600310 NRG3P56975 720 aa17.85■□□□□ 0.45
UPF1-209ENST00000600310 CORO7P57737 925 aa17.85■□□□□ 0.45
UPF1-209ENST00000600310 KCNK10P57789 538 aa17.85■□□□□ 0.45
UPF1-209ENST00000600310 PSPHP78330 225 aa17.85■□□□□ 0.45
UPF1-209ENST00000600310 ZNF169Q14929 603 aaPredicted RBP17.85■□□□□ 0.45
UPF1-209ENST00000600310 NNATQ16517 81 aa17.85■□□□□ 0.45
UPF1-209ENST00000600310 ZNF791Q3KP31 576 aaPredicted RBP17.85■□□□□ 0.45
UPF1-209ENST00000600310 PLEKHN1Q494U1 663 aaPredicted RBP17.85■□□□□ 0.45
UPF1-209ENST00000600310 SPDYE7PQ495Y7 208 aa17.85■□□□□ 0.45
UPF1-209ENST00000600310 AGKQ53H12 422 aa17.85■□□□□ 0.45
UPF1-209ENST00000600310 ZCCHC12Q6PEW1 402 aa17.85■□□□□ 0.45
UPF1-209ENST00000600310 IL20RBQ6UXL0 311 aa17.85■□□□□ 0.45
UPF1-209ENST00000600310 NPSR1Q6W5P4 371 aa17.85■□□□□ 0.45
UPF1-209ENST00000600310 SZRD1Q7Z422 152 aa17.85■□□□□ 0.45
UPF1-209ENST00000600310 SPATA21Q7Z572 469 aa17.85■□□□□ 0.45
UPF1-209ENST00000600310 CPLX4Q7Z7G2 160 aa17.85■□□□□ 0.45
UPF1-209ENST00000600310 DND1Q8IYX4 353 aaKnown RBP17.85■□□□□ 0.45
UPF1-209ENST00000600310 CYP4Z2PQ8N1L4 340 aa17.85■□□□□ 0.45
UPF1-209ENST00000600310 SPACA9Q96E40 222 aaPredicted RBP17.85■□□□□ 0.45
UPF1-209ENST00000600310 SGCZQ96LD1 299 aa17.85■□□□□ 0.45
UPF1-209ENST00000600310 INPP5KQ9BT40 448 aa17.85■□□□□ 0.45
UPF1-209ENST00000600310 EQTNQ9NQ60 294 aa17.85■□□□□ 0.45
UPF1-209ENST00000600310 MRGBPQ9NV56 204 aa17.85■□□□□ 0.45
UPF1-209ENST00000600310 ANAPC2Q9UJX6 822 aa17.85■□□□□ 0.45
UPF1-209ENST00000600310 NPFFR2Q9Y5X5 522 aa17.85■□□□□ 0.45
UPF1-209ENST00000600310 CAPN14A8MX76 684 aa17.84■□□□□ 0.45
UPF1-209ENST00000600310 SNX3O60493 162 aa17.84■□□□□ 0.45
UPF1-209ENST00000600310 CD46P15529 392 aa17.84■□□□□ 0.45
UPF1-209ENST00000600310 NAGAP17050 411 aa17.84■□□□□ 0.45
UPF1-209ENST00000600310 SOAT1P35610 550 aa17.84■□□□□ 0.45
UPF1-209ENST00000600310 MAP3K8P41279 467 aa17.84■□□□□ 0.45
UPF1-209ENST00000600310 PRIM2P49643 509 aa17.84■□□□□ 0.45
UPF1-209ENST00000600310 ZNHIT3Q15649 155 aaPredicted RBP17.84■□□□□ 0.45
UPF1-209ENST00000600310 TIGD2Q4W5G0 525 aa17.84■□□□□ 0.45
UPF1-209ENST00000600310 EXOSC6Q5RKV6 272 aaKnown RBP17.84■□□□□ 0.45
UPF1-209ENST00000600310 MFSD12Q6NUT3 480 aa17.84■□□□□ 0.45
UPF1-209ENST00000600310 BHLHB9Q6PI77 547 aa17.84■□□□□ 0.45
UPF1-209ENST00000600310 RTL4Q6ZR62 310 aa17.84■□□□□ 0.45
UPF1-209ENST00000600310 CDRT4Q8N9R6 151 aa17.84■□□□□ 0.45
UPF1-209ENST00000600310 Q8NA96 180 aa17.84■□□□□ 0.45
UPF1-209ENST00000600310 VPS33AQ96AX1 596 aa17.84■□□□□ 0.45
UPF1-209ENST00000600310 SPDL1Q96EA4 605 aa17.84■□□□□ 0.45
UPF1-209ENST00000600310 PANX1Q96RD7 426 aa17.84■□□□□ 0.45
UPF1-209ENST00000600310 FAM107BQ9H098 131 aa17.84■□□□□ 0.45
UPF1-209ENST00000600310 RMND5AQ9H871 391 aa17.84■□□□□ 0.45
UPF1-209ENST00000600310 SLC52A3Q9NQ40 469 aa17.84■□□□□ 0.45
UPF1-209ENST00000600310 SERHLQ9NQF3 203 aa17.84■□□□□ 0.45
UPF1-209ENST00000600310 SAR1AQ9NR31 198 aa17.84■□□□□ 0.45
UPF1-209ENST00000600310 PCDHGB6Q9Y5F9 930 aa17.84■□□□□ 0.45
UPF1-209ENST00000600310 CCDC154A6NI56 674 aa17.83■□□□□ 0.44
UPF1-209ENST00000600310 NR5A2O00482 541 aa17.83■□□□□ 0.44
UPF1-209ENST00000600310 SLC25A12O75746 678 aa17.83■□□□□ 0.44
UPF1-209ENST00000600310 HMGN2P05204 90 aaKnown RBP17.83■□□□□ 0.44
UPF1-209ENST00000600310 CD1EP15812 388 aa17.83■□□□□ 0.44
UPF1-209ENST00000600310 UQCRC2P22695 453 aa17.83■□□□□ 0.44
UPF1-209ENST00000600310 ABCD3P28288 659 aa17.83■□□□□ 0.44
UPF1-209ENST00000600310 LASP1Q14847 261 aaKnown RBP17.83■□□□□ 0.44
UPF1-209ENST00000600310 NTRK2Q16620 822 aa17.83■□□□□ 0.44
UPF1-209ENST00000600310 MAPKAPK3Q16644 382 aa17.83■□□□□ 0.44
UPF1-209ENST00000600310 ZNF766Q5HY98 468 aa17.83■□□□□ 0.44
UPF1-209ENST00000600310 SLC25A25Q6KCM7 469 aa17.83■□□□□ 0.44
UPF1-209ENST00000600310 WDR53Q7Z5U6 358 aaPredicted RBP17.83■□□□□ 0.44
UPF1-209ENST00000600310 SLC44A2Q8IWA5 706 aaPredicted RBP17.83■□□□□ 0.44
UPF1-209ENST00000600310 GOLM1Q8NBJ4 401 aa17.83■□□□□ 0.44
UPF1-209ENST00000600310 OR5AK3PQ8NH89 298 aa17.83■□□□□ 0.44
UPF1-209ENST00000600310 TMEM125Q96AQ2 219 aa17.83■□□□□ 0.44
UPF1-209ENST00000600310 SCMH1Q96GD3 660 aa17.83■□□□□ 0.44
UPF1-209ENST00000600310 C16orf58Q96GQ5 468 aa17.83■□□□□ 0.44
UPF1-209ENST00000600310 ITCHQ96J02 903 aa17.83■□□□□ 0.44
UPF1-209ENST00000600310 C5orf34Q96MH7 638 aa17.83■□□□□ 0.44
UPF1-209ENST00000600310 GPATCH2Q9NW75 528 aa17.83■□□□□ 0.44
UPF1-209ENST00000600310 PCDHGA10Q9Y5H3 936 aa17.83■□□□□ 0.44
UPF1-209ENST00000600310 CNTRLQ7Z7A1 2325 aa17.83■□□□□ 0.44
UPF1-209ENST00000600310 GCN1Q92616 2671 aaKnown RBP17.82■□□□□ 0.44
UPF1-209ENST00000600310 RNF103-CHMP3A0A140T963 221 aa17.82■□□□□ 0.44
UPF1-209ENST00000600310 RFXANKO14593 260 aa17.82■□□□□ 0.44
UPF1-209ENST00000600310 SORBS2O94875 1100 aaKnown RBP17.82■□□□□ 0.44
UPF1-209ENST00000600310 NKX2-2O95096 273 aa17.82■□□□□ 0.44
UPF1-209ENST00000600310 PRB1P04280 392 aa17.82■□□□□ 0.44
UPF1-209ENST00000600310 SP1P08047 785 aa17.82■□□□□ 0.44
UPF1-209ENST00000600310 CAPN3P20807 821 aa17.82■□□□□ 0.44
UPF1-209ENST00000600310 ADSLP30566 484 aaPredicted RBP17.82■□□□□ 0.44
UPF1-209ENST00000600310 GABRA3P34903 492 aa17.82■□□□□ 0.44
UPF1-209ENST00000600310 CDKN2CP42773 168 aa17.82■□□□□ 0.44
UPF1-209ENST00000600310 TMED10P49755 219 aaKnown RBP17.82■□□□□ 0.44
UPF1-209ENST00000600310 GAB1Q13480 694 aa17.82■□□□□ 0.44
UPF1-209ENST00000600310 TP53BP2Q13625 1128 aa17.82■□□□□ 0.44
UPF1-209ENST00000600310 VPS26BQ4G0F5 336 aa17.82■□□□□ 0.44
UPF1-209ENST00000600310 CYP27C1Q4G0S4 372 aa17.82■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms