RNA–Protein interactions for RNA: ENST00000590630.5

LIG3-213, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 904 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-213ENST00000590630 PPM1BO75688 479 aa10.95□□□□□ -0.66
LIG3-213ENST00000590630 CT45A8P0DMV1 189 aa10.95□□□□□ -0.66
LIG3-213ENST00000590630 CT45A9P0DMV2 189 aa10.95□□□□□ -0.66
LIG3-213ENST00000590630 LAMP1P11279 417 aa10.95□□□□□ -0.66
LIG3-213ENST00000590630 DIO3P55073 304 aa10.95□□□□□ -0.66
LIG3-213ENST00000590630 FBXW4P57775 412 aa10.95□□□□□ -0.66
LIG3-213ENST00000590630 RPP38P78345 283 aaKnown RBP10.95□□□□□ -0.66
LIG3-213ENST00000590630 PLCXD2Q0VAA5 305 aa10.95□□□□□ -0.66
LIG3-213ENST00000590630 ZNF155Q12901 538 aaPredicted RBP10.95□□□□□ -0.66
LIG3-213ENST00000590630 CT45A2Q5DJT8 189 aa10.95□□□□□ -0.66
LIG3-213ENST00000590630 TBCELQ5QJ74 424 aa10.95□□□□□ -0.66
LIG3-213ENST00000590630 TMEM64Q6YI46 380 aa10.95□□□□□ -0.66
LIG3-213ENST00000590630 BNC2Q6ZN30 1099 aaPredicted RBP10.95□□□□□ -0.66
LIG3-213ENST00000590630 RGS9BPQ6ZS82 235 aa10.95□□□□□ -0.66
LIG3-213ENST00000590630 FAM47EQ6ZV65 393 aa10.95□□□□□ -0.66
LIG3-213ENST00000590630 SPATA19Q7Z5L4 167 aa10.95□□□□□ -0.66
LIG3-213ENST00000590630 SIAH3Q8IW03 269 aa10.95□□□□□ -0.66
LIG3-213ENST00000590630 SLC34A3Q8N130 599 aa10.95□□□□□ -0.66
LIG3-213ENST00000590630 KRTCAP2Q8N6L1 136 aa10.95□□□□□ -0.66
LIG3-213ENST00000590630 OR5M3Q8NGP4 307 aa10.95□□□□□ -0.66
LIG3-213ENST00000590630 MAELQ96JY0 434 aaKnown RBP10.95□□□□□ -0.66
LIG3-213ENST00000590630 GPR137Q96N19 417 aa10.95□□□□□ -0.66
LIG3-213ENST00000590630 BHLHE41Q9C0J9 482 aaPredicted RBP10.95□□□□□ -0.66
LIG3-213ENST00000590630 C3orf14Q9HBI5 128 aa10.95□□□□□ -0.66
LIG3-213ENST00000590630 NTMQ9P121 344 aa10.95□□□□□ -0.66
LIG3-213ENST00000590630 SEC14L3Q9UDX4 400 aa10.95□□□□□ -0.66
LIG3-213ENST00000590630 PTPN13Q12923 2485 aa10.95□□□□□ -0.66
LIG3-213ENST00000590630 FREM3P0C091 2139 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 SPTAN1Q13813 2472 aaKnown RBP10.94□□□□□ -0.66
LIG3-213ENST00000590630 A0A0G2JMM0 328 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 A0A1W2PPB8 328 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 A0A1W2PRB8 838 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 A0A1W2PRS3 328 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 TTC36A6NLP5 189 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 KIR3DP1A8MWS1 328 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 NPIPA5E9PKD4 350 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 ACOT7O00154 380 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 TFECO14948 347 aaPredicted RBP10.94□□□□□ -0.66
LIG3-213ENST00000590630 ABCB7O75027 752 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 UNC5CO95185 931 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 ABCB1P08183 1280 aaPredicted RBP10.94□□□□□ -0.66
LIG3-213ENST00000590630 EPHA3P29320 983 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 CLNS1AP54105 237 aaKnown RBP10.94□□□□□ -0.66
LIG3-213ENST00000590630 CORO7P57737 925 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 KCNJ2P63252 427 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 PRR5P85299 388 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 PSG6Q00889 435 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 ZNHIT3Q15649 155 aaPredicted RBP10.94□□□□□ -0.66
LIG3-213ENST00000590630 DPY19L1Q2PZI1 675 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.94□□□□□ -0.66
LIG3-213ENST00000590630 LSM12Q3MHD2 195 aaKnown RBP10.94□□□□□ -0.66
LIG3-213ENST00000590630 RNFT1Q5M7Z0 435 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 GFRALQ6UXV0 394 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 NUP54Q7Z3B4 507 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 SLC22A16Q86VW1 577 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 PRR22Q8IZ63 422 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 CEP70Q8NHQ1 597 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 PSMA8Q8TAA3 256 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 PRR7Q8TB68 274 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 SPPL2AQ8TCT8 520 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 ACTRT2Q8TDY3 377 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 DIO2Q92813 273 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 TESCQ96BS2 214 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 OMA1Q96E52 524 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 DUSP26Q9BV47 211 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 DPY30Q9C005 99 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 WDR55Q9H6Y2 383 aaPredicted RBP10.94□□□□□ -0.66
LIG3-213ENST00000590630 IL1RL2Q9HB29 575 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 NEUROD4Q9HD90 331 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 CNOT11Q9UKZ1 510 aaKnown RBP10.94□□□□□ -0.66
LIG3-213ENST00000590630 BOKQ9UMX3 212 aaPredicted RBP10.94□□□□□ -0.66
LIG3-213ENST00000590630 NPIPA1Q9UND3 350 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 ASH1LQ9NR48 2969 aaKnown RBP10.94□□□□□ -0.66
LIG3-213ENST00000590630 SPTBN1Q01082 2364 aaKnown RBP10.94□□□□□ -0.66
LIG3-213ENST00000590630 NCKAP5O14513 1909 aa10.94□□□□□ -0.66
LIG3-213ENST00000590630 DOPEY2Q9Y3R5 2298 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 GOLGA8QA0A0J9YX86 632 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 CLEC18AA5D8T8 446 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 PINLYPA6NC86 204 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 GOLGA8OA6NCC3 632 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 OR6C70A6NIJ9 312 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 GOLGA8NF8WBI6 632 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 G3V3Y1 287 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 ZNF195O14628 629 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 ANKRD28O15084 1053 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 EMC8O43402 210 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 ASNA1O43681 348 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 GLSO94925 669 aaPredicted RBP10.93□□□□□ -0.66
LIG3-213ENST00000590630 SNX4O95219 450 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 TGDSO95455 350 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 ALDOCP09972 364 aaKnown RBP10.93□□□□□ -0.66
LIG3-213ENST00000590630 KRT20P35900 424 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 PIGAP37287 484 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 RFC3P40938 356 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 DNASE1L1P49184 302 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 CDK9P50750 372 aaKnown RBP10.93□□□□□ -0.66
LIG3-213ENST00000590630 PLGLB1Q02325 96 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 SRSF11Q05519 484 aaKnown RBP10.93□□□□□ -0.66
LIG3-213ENST00000590630 RBPJQ06330 500 aa10.93□□□□□ -0.66
LIG3-213ENST00000590630 FOXO1Q12778 655 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms