RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 PYCR2Q96C36 320 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 SLC39A13Q96H72 371 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 ZC3HAV1LQ96H79 300 aaKnown RBP3.92□□□□□ -1.78
LIG3-211ENST00000588713 LCORQ96JN0 433 aaPredicted RBP3.92□□□□□ -1.78
LIG3-211ENST00000588713 CEP19Q96LK0 163 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 TEX37Q96LM6 180 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 C1orf74Q96LT6 269 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 PPP3R2Q96LZ3 170 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 PPM1MQ96MI6 270 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 ZNF583Q96ND8 569 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 COL21A1Q96P44 957 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 KCNA7Q96RP8 456 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 EPYCQ99645 322 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 SLC30A2Q9BRI3 323 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 AARSD1Q9BTE6 412 aaKnown RBP3.92□□□□□ -1.78
LIG3-211ENST00000588713 SPATA9Q9BWV2 254 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 CDADC1Q9BWV3 514 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 POLDIP3Q9BY77 421 aaKnown RBP3.92□□□□□ -1.78
LIG3-211ENST00000588713 ULBP3Q9BZM4 244 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 SPRY4Q9C004 299 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 SLC25A51Q9H1U9 297 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 RIBC2Q9H4K1 309 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 ACTL8Q9H568 366 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 CATSPERBQ9H7T0 1116 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 ZNF556Q9HAH1 456 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 SYTL2Q9HCH5 934 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 PDE7BQ9NP56 450 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 RPRD1BQ9NQG5 326 aaKnown RBP3.92□□□□□ -1.78
LIG3-211ENST00000588713 TLR8Q9NR97 1041 aaKnown RBP3.92□□□□□ -1.78
LIG3-211ENST00000588713 GPR27Q9NS67 375 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 KRT84Q9NSB2 600 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 OLA1Q9NTK5 396 aaKnown RBP3.92□□□□□ -1.78
LIG3-211ENST00000588713 C1orf109Q9NX04 203 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 PAQR5Q9NXK6 330 aaPredicted RBP3.92□□□□□ -1.78
LIG3-211ENST00000588713 B3GNT2Q9NY97 397 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 PTTG3PQ9NZH4 202 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 EHD3Q9NZN3 535 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 HECAQ9UBI9 543 aaPredicted RBP3.92□□□□□ -1.78
LIG3-211ENST00000588713 NIPSNAP3AQ9UFN0 247 aaPredicted RBP3.92□□□□□ -1.78
LIG3-211ENST00000588713 GIMAP2Q9UG22 337 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 ADGRE2Q9UHX3 823 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 RPS6KA6Q9UK32 745 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 PCTPQ9UKL6 214 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 AGO1Q9UL18 857 aaKnown RBP3.92□□□□□ -1.78
LIG3-211ENST00000588713 TBC1D24Q9ULP9 559 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 RNF112Q9ULX5 631 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 SNX7Q9UNH6 387 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 SNX6Q9UNH7 406 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 MAPRE3Q9UPY8 281 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 TLR6Q9Y2C9 796 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 PKP3Q9Y446 797 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 TMEM184BQ9Y519 407 aaPredicted RBP3.92□□□□□ -1.78
LIG3-211ENST00000588713 POLR3HQ9Y535 204 aaPredicted RBP3.92□□□□□ -1.78
LIG3-211ENST00000588713 AUP1Q9Y679 476 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 V9GYH0 126 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 CHD5Q8TDI0 1954 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 ZGRF1Q86YA3 2104 aa3.92□□□□□ -1.78
LIG3-211ENST00000588713 MYO7BQ6PIF6 2116 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 ANK3Q12955 4377 aaKnown RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 SYNJ2BP-COX16A0A087WUM0 186 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 A0A096LPI6 279 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 A0A0G2JMP0 313 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 MEIOCA2RUB1 952 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 KRT87PA6NCN2 255 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 OR5K3A6NET4 321 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 ZSCAN5BA6NJL1 495 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 WASH4PA8MWX3 477 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 C1QTNF3-AMACRE9PGA6 284 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 I6L893 689 aaPredicted RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 FPGTO14772 594 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 BET1O15155 118 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 SEC14L5O43304 696 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 MAFKO60675 156 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 HCN1O60741 890 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 ZNF780AO75290 641 aaPredicted RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 PMPCBO75439 489 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 WBP4O75554 376 aaKnown RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 CCNDBP1O95273 360 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 PAK4O96013 591 aaPredicted RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 MT-CYBP00156 380 aaPredicted RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 GOT2P00505 430 aaKnown RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 SERPINA1P01009 418 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 HLA-DQB1P01920 261 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 SLC4A1P02730 911 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 C9P02748 559 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 FTH1P02794 183 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 FGF1P05230 155 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 IL6P05231 212 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 FABP3P05413 133 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 ALPIP09923 528 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 ZDHHC11BP0C7U3 371 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 DBTP11182 482 aaKnown RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 PIPP12273 146 aaPredicted RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 NID1P14543 1247 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 ACPPP15309 386 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 NAGAP17050 411 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 HOXB9P17482 250 aaPredicted RBP3.91□□□□□ -1.78
LIG3-211ENST00000588713 HLA-DPA1P20036 260 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 GGT2P36268 569 aa3.91□□□□□ -1.78
LIG3-211ENST00000588713 LIPAP38571 399 aa3.91□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms